ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584307 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◣ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
MAPKAPK5
POLR3F
DZANK1
NME6
PSMD1
IPO13
ZNF335
NCLN
DYNC1LI2
SUDS3
CACTIN
RWDD1
NUP85
NEUROG2
VTI1B
VDAC2
POLR2E
MRPS7
GGA3
EFTUD2
CCDC103
HSPA9
NUP205
PSMG2
CEP76
TSN
TBCK
AIMP1
NVL
GOSR2
REXO1
DCTN1
TSNAX
STAM2
RPL21
SKP1
IRGQ
ZNF576
EXOSC5
BCKDHA
C19orf48
SEC61B
ALG2
PES1
STAM
CAPRIN1
PNO1
SRD5A1
RBBP5
BLCAP
SLC35B1
UPF2
FARSB
LYRM4
FARS2
ACTR10
ATP5MG
PCBP1
NEUROG3
PAK1IP1
C6orf52
NDUFA4
HADHB
HADHA
GOLGA5
PSMD12
ZRANB2
TMED1
COX7A2L
VARS1
TTC8
DPH6
SUPV3L1
ANAPC7
PI4KB
ISCU
SART3
PDAP1
BUD31
UFM1
MRPS5
ICE1
IQCG
RPL35A
SF3B3
COG4
SELENOF
HS2ST1
RPS23
ATP6AP1L
RABGGTB
ADK
AP3M1
RBKS
BABAM2
USP1
PROSER1
NHLRC3
FAM104A
C17orf80
SMC2
EIF4ENIF1
OSGEP
APEX1
XPNPEP3
ST13
RPS12
RPS27A
CLHC1
BICRA
PAF1
UBE2I
COMMD1
CCT4
TM9SF1
NDUFA10
HES1
BNIP3
VEZT
FGD6
MRTO4
EMC1
ATOH1
ARHGAP11A-SCG5
ARHGAP11A
PIN4
BAG6
RPS29
LRR1
RBBP7
GTF3C4
DDX31
INSM1
DDX39B
C16orf91
RPN1
ARHGEF1
SUCLG1
NEUROG1
CDC73
EIF2S3
OAZ3
MRPL9
ANKLE2
TAF9
RAD17
AK6
SKIL
PMAIP1
PCBD2
PDHX
APIP
SEC11C
RPL7
RDH10
LPIN1
GADD45GIP1
PRUNE2
PTGES2
ZGPAT
ARFRP1
STK36
RNF25
PRDM12
ALKBH5
IGFBP2
ZNF383
SRSF11
LRRC40
ANK2
GFER
CNPY2
TLE2
SH2B1
PDHB
GORAB
TMEM70
AXDND1
RYBP
KIF26A
KIF21B
EIF4H
RBPJ
NELFA
CLDN2
PDE12
RGS12
KDM1A
CASC3
BFSP1
CLEC18C
MYRIP
RAI14
SPCS1
GLT8D1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BBS9
HSPA1B
TBC1D8
MALRD1
BRWD1
CLGN
TLE4
ZNF746
JAKMIP1
DDX3X
TPRA1
TIGD1
EIF4E2
HOXB4
GFRA3
MEPCE
ZCWPW1
NRDE2
HOXA4
CDIP1
ID1
DGKZ
MRPL38
CCNDBP1
ARL14EP
CS
GTF3A
SLC7A6OS
PRMT7
SPHK2
RPL18
SLC10A2
CNTLN
PNKD
PCBP2
VOPP1
NCBP3
RPS10-NUDT3
RPS10
ZFHX3
CCDC43
ZNF341
RNF138
SFT2D2
GADD45G
RNF32
ACBD6
MFSD3
WDR47
RPS26
CPVL
CHN2
DUSP2
NPAS4
SRRM3
CALHM6
ZNF292
RARA
SLC39A6
C12orf42
CBX3
HNRNPA2B1
MUSTN1
VANGL2
TCHP
E2F6
CHD8
OR8J1
CPLX1
AP1B1
ZBTB25
ZBTB1
CNN3
SPACA1
CDX1
SGK3
DNAJB2
PEX2
CLEC18B
SEMA4B
ZNF891
ZNF10
HNRNPD
CAMTA1
UGT8
EVI5
ITPRIP
POLR3A
KMT2A
DHX32
MGST1
RCOR1
TRDMT1
RHBDD1
HEY1
ZNF783
FTCDNL1
KAT6A
HOXD3
CEP41
PLXNB1
TBC1D15
POLR2J3
MET
CEMP1
ARHGEF28
USP17L15
YAP1
SLC25A6
HOXA2
ID2
ST18
SP5
GATA4
GPR108
RARB
GRSF1
KAZALD1
ARSG
SPATC1L
NR2F1
ZFHX4
MRPL34
RASSF2
FLOT1
NDUFS7
DUSP6
INAFM2
TMPPE
GLB1
SH3BP2
RNF149
UPF3A
MBD2
METTL11B
ZNF608
HOXA3
FOXP1
KAT6B
HUS1
MTRNR2L2
MTRNR2L8
LIN28A
DSCAML1
ARID5A
NEO1
HEXIM2
SP2
PARK7
CCPG1
C15orf65
RPS6KA1
SEC14L1
HOXC5
C11orf24
KCNAB2
ARHGAP24
SLCO4C1
KDM3A
GRHL3
CCDC88A
SPECC1
ARHGEF10L
NADK
STK38
NCOA2
FGFRL1
KLF17
NBEAL2
SKIV2L
NELFE
NKD1
CPSF4L
LPCAT3
MTMR4
BIN2
FGR
DIAPH1
CDCA7L
NBPF1
ZNF76
MEF2C
USP15
SNX3
WNT10B
LNPEP
CABIN1
CDC42EP3
DENND2D
CCDC174
DIAPH3
REC8
PRDM10
RSRC1
RUNX1T1
POR
ZCCHC3
NFKBIA
IQCH
AAGAB
CD38
TRAF4
ING1
VAV1
HEBP2
CMTR1
ATP23
CNOT2
DHRS3
PCNA
RASSF5
OTX1
EXOSC4
MINDY2
OTUD7B
IQGAP2
HES3
PKN2
FAM110A
PPIB
PDPN
SHB
SMARCD2
PLCB2
NKIRAS1
PCTP
IFRD2
H6PD
PEX14
YTHDF2
NDFIP2
HMGCS1
PRDM1
CFD
SLC35E2B
HESX1
PXYLP1
TBRG4
HIBADH
ARIH2
PLEKHO2
NR1D2
RNF139
JAK3
SH3TC1
CYCS
PDE4D
ZDHHC4
PKM
CCDC114
ZNF740
CSAD
SP7
BNIP2
DYNLL1
SOD2
PIK3AP1
KANSL3
LTBR
DPP9
ADM
CLIC4
CBFA2T3
NR2C1
KCTD6
AKIRIN1
ADCY7
PRSS56
DTNB
TTI2
ATXN1L
SLC35E2A
PTGES3
RBL2
HOXB3
HES5
SRPRA
FCHSD2
TMEM222
SSX2IP
FAF2
C12orf29
RARG
CALM2
CD164
USP3
CTTN
SLC39A13
ANKRD13D
TRMT6
MCM8
TBX2
RMND5A
CSRNP1
MRPS24
TRERF1
SNAPC3
BAZ1B
LAPTM5
TXNRD1
USP42
NOTCH2NLA
ARHGAP4
UNC13D
STX18
SBNO2
CLTC
PIP4P2
MAP2K1
MAD1L1
MTF2
KCNH2
IL21R
PPCDC
MTCH1
DGAT2
CENPH
ZNF25
RNF125
ATG16L2
RASGRP2
PEAK3
THRAP3
COX5A
MRPS31
ZNF503
NOTCH2NLC
PKDCC
ZSWIM6
EPM2A
RAD50
PIKFYVE
ZBTB17
SDE2
ARL4A
UROD
HECTD3
PSMD3
LRIG3
FBXO41
SMPD1
ZNF414
QPRT
RFESD
ADAM17
RXRA
STRADA
KEAP1
ACOT2
RWDD2A
PGM3
MC1R
MTRF1L
WTAP
LSM5
MAGEF1
ERLIN2
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
PANK2
ZNF318
ASNS
USPL1
HMGB1
PEX3
ADAT2
ATAD3B
UBL7
DYNLT1
DONSON
VPS37C
C1orf159
TUBB
FXYD2
NOTCH2
OR2L13
MAST2
GPATCH8
NGRN
MCU
FAM120B
RNF103-CHMP3
PNRC2
PHF19
MAPKAPK3
CISH
TCF4
TIGD5
EEF1D
CBWD6
RER1
MORN1
UPP1
ARF3
C18orf32
HOXC6
BUD13
LIX1
IFNGR1
NIBAN2
DDX23
FAM227B
FABP5
DTWD1
GABRB2
NCBP2AS2
NCBP2
SPIN1
ATAD3A
USP21
NOTCH2NLB
LRCH4
FBXO24
KIF1C
INCA1
KMT5A
CCDC59
CYB5R4
HPF1
DENND1A
TDP2
CNOT6
BHLHE40
ACOT13
NINJ2
RAP1GAP2
NUDT15
ARHGAP45
SYPL1
NANP
YY1AP1
DAP3
C12orf65
UBE2L3
RIMBP3C
RIMBP3B
ARHGEF18
PCMT1
AVL9
CDS2
NMNAT1
LZIC
CEP135
ASB1
SLC7A5
MYCBP2
TSPAN4
POLR2L
ATG5
APBB1IP
CACYBP
CCNL1
SERTAD2
SEH1L
PTDSS1
MTERF3
MFN2
ZCCHC24
GSPT1
KRI1
EIF3D
C21orf91
SNUPN
LTB4R
LANCL2
EIF5
UNK
ADORA2A
HYLS1
HOXC4
SREBF2
TRAP1
PSMF1
HMGCL
MTMR1
ZNF219
TBX3
RPLP1
RITA1
DDX54
ASH1L
GTF2H3
EIF2B1
BRAT1
CTSC
DISP3
TLE3
TAS1R1
NOL9
UBIAD1
FDX1
IMPA1
CD63
USP34
TMEM199
POLDIP2
MAPK6
THUMPD3
DLX2
FNTA
NAA40
SLC16A6
LAMP1
MT2A
NOC4L
DDX51
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ZNF395
DUSP4
ARHGAP27
MKRN2
ARF4
ZFAND2A
MBD6
PDZD2
NREP
CARMIL1
BRAP
ACAD10
ATOH8
IL6R
POLD2
FKBP1A
ACVR1
EIF1B
PTK2B
LONRF3
PGD
RPS3
PGLS
RPL8
ATG101
TKFC
DDB1
SGK1
MDM2
HNRNPF
CHST11
TNFRSF19
ELOVL6
RCOR3
RIMBP3
GARS1
TMEM65
CDC42
FAF1
DNAH7
RAN
DYNC2H1
CSNK1A1
BOD1L1
GFUS
CNPY3
POU2F1
GALE
LCOR
DHRS4L2
DHRS4
WBP1L
SPRY2
SMIM20
NCKAP5L
SMG6
RERE
FKBP5
EHD1
SPPL2A
UBE2K
PPIL4
CXXC4
MRPL20
DENND4B
C6orf89
ABHD12
RCC2
ZBTB45
POLG
SNAPC5
NEURL2
CTSA
PPP4R3B
TPP2
TBL3
ZC3H6
GPCPD1
RAC2
CBX5
PRKAB1
IPP
NUS1
ELMO1
CLCN3
FOS
RBSN
B3GALNT2
MACROH2A1
TMEM41A
SLC35A1
PTP4A2
GFRA1
CD93
TAF12
RAB11FIP1
INTS5
PSTPIP1
CLN5
MRPS28
ZNF593
RNF19A
RGS14
MTCH2
LRRC59
C1orf232
THYN1
RNF216
ETFA
ACAD8
DCP1A
TRAM1
PRR19
PAFAH1B3
PRKAG1
SPDYE14
SPDYE10P
CCDC92
PPP1R8
C15orf61
SPTBN5
SOX12
NDUFV1
MYADM
GATD3B
GATD3A
ZBTB12
MEIS2
MEIS3
SEPTIN2
HDLBP
FAM3C
STARD3
RBM15B
ZNF397
FADS2
FADS1
DRAP1
C11orf68
IQSEC1
ATXN2
SECISBP2L
MARCHF7
IDS
ABHD2
ZNF774
UHRF2
ABCF1
SNX15
LGALS1
CNR1
WDR53
SEC13
SCAMP4
FBXO45
CAP1
ARID1A
ADAT3
DTX2
DHDDS
RCN2
OSBPL3
DBI
CYP2W1
C2orf76
SLC43A3
MIDEAS
NOL4L
RAB3D
PSMD9
HPD
BIRC2
RUNX3
CLK1
MT1G
RNF168
PURB
PLAGL1
ADPGK
TRNAU1AP
FOXN2
EXD1
CHP1
NIBAN1
CPQ
ZFAND3
SPATC1
LST1
TESMIN
RNF34
HBS1L
RFC2
PDZRN3
MAP2K3
MVK
GNA13
TMEM123
URGCP
ANKRD36C
YARS1
SLC39A7
S100PBP
RXRB
TCTE3
ERMARD
CELF4
CCNL2
SIPA1
PHF13
ZFPL1
CDCA5
TMEM230
NBN
MESD
EIF3B
DPP8
POLDIP3
ZNF212
KATNA1
NSUN6
ARL5B
TAF15
PKNOX1
ICE2
ZZZ3
CIAO2A
ANKHD1-EIF4EBP3
ANKHD1
CSRNP2
MYL12B
SNAP29
PI4KA
MRPS15
GZF1
ZCCHC4
FES
IGFBP6
CGAS
TRIAP1
FBXL18
RANBP3
HTRA2
C15orf40
UBE2V2
GTF2H2C
GTF2H2C_2
STAU2
REL
DDX46
C15orf39
VPS36
TNPO1
FANCE
SRSF2
POLR2J
MFSD11
ZNF3
SDF4
B3GALT6
WASF2
TUBGCP3
METTL23
LZTFL1
JMJD6
CDK11A
ACTR3
ZNF202
TPO
SLC25A19
CRLS1
SYNRG
RAB37
KBTBD2
FBXO31
F2RL3
LRRC37A3
TMEM217
TBC1D22B
MTHFD1L
VPS37A
RPS6KB2
RB1