| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Pathological items | Open TG-GATEs | 10.18908/lsdba.nbdc00954-01-012 |
The list of pathological findings obtained from in vivo tests. |
open_tggates_pathology.zip
(89 KB) |
http://togodb.biosciencedbc.jp/togodb/view/open_tggates_pathology#en |
We prepared hematoxylin-eosin-stained specimen slides and then performed histopathological examination by optical microscopy. |
- |
12,861 entries |
Data detail
open_in_full
|
| Pathological Image Information | Open TG-GATEs Pathological Image Database | 10.18908/lsdba.nbdc00954-02-001 |
Information regarding each high-resolution digital image in the "Pathological Images (SVS format)" section. |
open_tggates_pathological_image.zip
(370 KB) |
http://togodb.biosciencedbc.jp/togodb/view/open_tggates_pathological_image#en |
Information entered into the digital slide scanner while scanning the slides. |
- |
52,879 entries |
Data detail
open_in_full
|
| Pathological Images (SVS format) | Open TG-GATEs Pathological Image Database | 10.18908/lsdba.nbdc00954-02-002 |
High-resolution whole slide digital images of liver and kidney pathological specimens stained with hematoxylin-eosin dyes. The specimens were obtained through animal tests. |
Pathological Images in SVS format
(25 TB (Total amount of SVS files)) |
- |
Digital images of glass slides were scanned by using digital slide scanner (Aperio's ScanScope AT). |
- |
52,879 entries |
Data detail
open_in_full
|
| Cluster (Cyanobacteria) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-005.V002 |
Clusters of amino acid sequences of Cyanobacteria (blue-green algae) obtained from the NCBI Reference Sequence Database. Along a phylogenetic tree, clusters were generated in Cyanobacteria taxon and in each sub-taxon of Cyanobacteria by using the results of all-against-all BLAST searches among the amino acid sequences. An amino acid sequence belongs to only one cluster in a taxon. |
pgdbj_ortholog_db_cyanobacteria_cluster.zip
(8.2 MB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_cyanobacteria_cluster#en |
Data in "Protein (Cyanobacteria)" was used. |
Along a phylogenetic tree obtained from the NCBI Taxonomy Database, clusters in lower taxa (subclusters) were recursively aggregated to form clusters in a taxon (superclusters). |
1,095,715 entries |
Data detail
open_in_full
|
| Cluster (Viridiplantae) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-002.V002 |
Clusters of amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database. Along a phylogenetic tree, clusters were generated in Viridiplantae taxon and in each sub-taxon of Viridiplantae by using the results of all-against-all BLAST searches among the amino acid sequences. An amino acid sequence belongs to only one cluster in a taxon. |
pgdbj_ortholog_db_viridiplantae_cluster.zip
(16.6 MB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_viridiplantae_cluster#en |
Data in "Protein (Viridiplantae)" was used. |
Along a phylogenetic tree obtained from the NCBI Taxonomy Database, clusters in lower taxa (subclusters) were recursively aggregated to form clusters in a taxon (superclusters). |
2,310,444 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata