About This Database

Pathological items

Data description

Data name

Pathological items

DOI

Description of data contents

The list of pathological findings obtained from in vivo tests.

Data file

File name :

open_tggates_pathology.zip

File URL :

File size :

89 KB

Simple search URL

Data acquisition method

We prepared hematoxylin-eosin-stained specimen slides and then performed histopathological examination by optical microscopy.

Data analysis method

Number of data entries

12,861 entries

Data detail

Data item	Description
BARCODE	Bar-code assigned to each GeneChip in order to indentify. Bar-code matches CEL file name without extension. Data with the value "No ChipData" don't have a corresponding CEL file since the microarray gene expression analysis wasn't performed.
EXP_ID	ID assigned to each test which can be indentified by a combination of COMPOUND_NAME, SPECIES, EXP_TEST_TYPE, and SINGLE_REPEAT_TYPE. IDs for in vivo tests are assigned from #0040. IDs for in vitro tests are assigned from #5000.
GROUP_ID	ID assigned to each group which can be indentified by a combination of DOSE_LEVEL and SACRIFICE_PERIOD. IDs are in double digits. (e.g. 01, 16)
INDIVIDUAL_ID	ID assigned to each individual within a group. IDs are in single digit.
COMPOUND_NAME	Compound name
DOSE_LEVEL	Dose level. The ascending order of the levels is Control, Low, Middle, High.
SACRIFICE_PERIOD	Sampling time or period on in vivo test.
ORGAN	Organ evaluated in tests. Liver or Kidney.
FINDING_TYPE	Pathological findings.
TOPOGRAPHY_TYPE	Region of the organ where the pathological changes were found.
GRADE_TYPE	Magnitude of pathological changes. The ascending order of the magnitude is P(present), minimal, slight, moderate, severe.
SP_FLG	The flag shows whether the lesion occurred spontaneously. The flag value is "1" if the lesion occurred spontaneously.
PATHOLOGICAL_IMAGE	Link to "Pathological images"