About This Database
Cluster (Viridiplantae)
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Data name
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Cluster (Viridiplantae) | ||||||||||
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DOI
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10.18908/lsdba.nbdc01194-02-002.V002 |
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Description of data contents
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Clusters of amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database. Along a phylogenetic tree, clusters were generated in Viridiplantae taxon and in each sub-taxon of Viridiplantae by using the results of all-against-all BLAST searches among the amino acid sequences. An amino acid sequence belongs to only one cluster in a taxon. | ||||||||||
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Data file
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File name :
pgdbj_ortholog_db_viridiplantae_cluster.zip
File URL :
File size :
16.6 MB
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Simple search URL
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http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_viridiplantae_cluster#en | ||||||||||
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Data acquisition method
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Data in "Protein (Viridiplantae)" was used. |
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Data analysis method
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Along a phylogenetic tree obtained from the NCBI Taxonomy Database, clusters in lower taxa (subclusters) were recursively aggregated to form clusters in a taxon (superclusters). |
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Number of data entries
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2,310,444 entries |
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