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Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail
RPD link result KOME 10.18908/lsdba.nbdc00120-028

Results of homology searches against the Rice Proteome Database

Performed blastn searches with the full-length cDNA clones against the Rice Proteome Database.

Data detail open_in_full
SwissProt search result KOME 10.18908/lsdba.nbdc00120-019

Results of blastx searches against the Swiss-Prot database

The Swiss-Prot database was used for the searches.

Performed blastx searches against the Swiss-Prot database.
The results are filtered with Expect values lower than 1e-10.

Data detail open_in_full
Tos17 link result KOME 10.18908/lsdba.nbdc00120-014

Relation with Tos17 mutant clones

The flanking sequences of Tos17-induced insertion mutants obtained from the Rice Tos17 Insertion Mutant Database were used.

We predicted that there would be relations between the overlapped regions that emerge by mapping both the Tos17 flanking seqeunces and the full-length cDNA clones to the rice genome BAC contigs.
The blastn searches were performed with threshold Expect value of less than 1e-100 for the mapping.

Data detail open_in_full
Trimming information KOME 10.18908/lsdba.nbdc00120-030

Nucleotide sequences that the regions predicted to be poly(A) sites and vector-derived sites were trimmed.
161 out of 32,127 sequences were trimmed as above.

Data detail open_in_full
UniProt search blastx result KOME 10.18908/lsdba.nbdc00120-020

Results of blastx searches against the UniProt database

UniProt Knowledgebase Release 6.3 was used for the searches.

Performed blastx searches against the UniProt database.
The results are filtered with Expect values lower than 1e-10.

Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail