Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| PIR search result | KOME | 10.18908/lsdba.nbdc00120-018 |
Results of blastx searches against the PIR protein database |
PIR Release 80.00 (December 31, 2004) was used for the searches. |
Performed blastx searches against the PIR protein database.
|
Data detail
open_in_full
|
| PLACE search result | KOME | 10.18908/lsdba.nbdc00120-015 |
Results of signal search against PLACE.
|
The full-length cDNA clones were mapped to japonica rice genome sequences.
|
After mapping the cDNA clones to the japonica rice genome sequences, Cis-element analysis were performed against 1000-bp upstream regions of the site where the full-length cDNA clones were mapped. |
Data detail
open_in_full
|
| Product annotations | KOME | 10.18908/lsdba.nbdc00120-010 |
Extracted the hits related to protein gene products or protein functions from GenBank blastn/blastx results. |
Performed blastn searches against Genbank nucleotide sequences and blastx searches against Genbank amino acid sequences. |
Showing the entries related to protein gene products or protein functions in GenBank blastn/blastx results.
|
Data detail
open_in_full
|
| pSort search result | KOME | 10.18908/lsdba.nbdc00120-027 |
Results of protein subcellular localization predictions |
PSORT version 5.8 was used for the predictions. |
Performed subcellular localization predictions using the PSORT program. |
Data detail
open_in_full
|
| RMOS blastn result | KOME | 10.18908/lsdba.nbdc00120-013 |
Results of blastn searches against the Rice EST Microarray (G-Array) |
Rice genome sequences used for the searches were obtained from the Rice Microarray Opening Site (RMOS). |
Performed blastn (blast 2.2.12) searches against the probe sequences on the Rice EST Microarray (G-Array).
|
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |