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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
Table of Cluster and Organism Species Number	Gclust Server	10.18908/lsdba.nbdc00464-010	Cluster, representative sequence ID of cluster, its length, the number of sequences contained in the cluster, organism species, the number of sequences belonging to the cluster for each of 95 organism species, compiled into a tab-delimited text file format table.	-	-	Data detail open_in_full
Gene Name Thesaurus	Gene Name Thesaurus	10.18908/lsdba.nbdc00966-001	Curators who have expertize in biological research edit gene names found in various databases and articles to show associations between them.	We extracted synonyms described in databases such as Entrez Gene, Swiss-Prot and HGNC.	1. Collect gene names automatically from synonym information fields in various gene/genome databases. 2. The curators who have expertise in biological research confirm the name variation for genes and associate them. They also delete names which are confusing to associate (polysemy, acronyms for different genes etc.). 3. Extract words describe gene names from MEDLINE abstracts and collect unregistered names. 4. Evaluate detection performance of gene names in the dictionary. 5. Add non-detected words to the dictionary and repeat 4-5 using other literature set.	Data detail open_in_full
HTML Source	GENIUS II	10.18908/lsdba.nbdc00471-001	HTML Source of the original site (terminated). Note that links to CGI don't work.			Data detail open_in_full
ORF Alignment	GENIUS II	10.18908/lsdba.nbdc00471-005	It links to the alingment information between ORF and intermediate sequences	RefSeq, nr-aa	We conducted BLAST search between ORF and intermediate sequences (nr-aa).	Data detail open_in_full
ORF List	GENIUS II	10.18908/lsdba.nbdc00471-002	This is the ORF list of 234 genomes. You can access to ORF sequences and these alignments information.	PDB, RefSeq, nr-aa, PROSITE, CATH	PDB structures were assigned to nr-aa protein sequences using PSI-BLAST search. Hit regions which met a similarity threshold calculated using CATH structure information were gathered as intermediate sequences, and genome ORF sequences were assigned to these intermediate sequences by BLAST search. Thus, PDB structures were linked to genome ORF sequences via intermediate sequences.	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail