| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| Protein (Cyanobacteria) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-004.V002 |
Amino acid sequences of Cyanobacteria (blue-green algae) obtained from the NCBI Reference Sequence Database with the NCBI GI numbers, the Reference Sequence IDs, and annotations. The IDs of clusters that the amino acid sequences belong to in each taxon are indicated. |
pgdbj_ortholog_db_cyanobacteria_protein.zip
(106 MB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_cyanobacteria_protein |
Amino acid sequences obtained from the NCBI Reference Sequence Database. |
Organisms that have equal to or greater than 500 amino acid sequences in the NCBI Reference Sequence Database were included. |
797,587 entries |
Data detail
open_in_full
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| Protein (Viridiplantae) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-001.V002 |
Amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database with the NCBI GI numbers, the Reference Sequence IDs, and annotations. The IDs of clusters that the amino acid sequences belong to in each taxon are indicated. |
pgdbj_ortholog_db_viridiplantae_protein.zip
(200 MB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_viridiplantae_protein#en |
Amino acid sequences obtained from the NCBI Reference Sequence Database. |
Organisms that have equal to or greater than 500 amino acid sequences in the NCBI Reference Sequence Database were included. |
1,137,698 entries |
Data detail
open_in_full
|
| Taxon (Cyanobacteria) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-006.V002 |
Phylogenetic relationships among the recursively generated clusters in "Cluster (Cyanobacteria)." |
pgdbj_ortholog_db_cyanobacteria_taxon.zip
(7.4 KB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_cyanobacteria_taxon#en |
Phylogenetic relationships were obtained from the NCBI Taxonomy Database. |
318 entries |
Data detail
open_in_full
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|
| Taxon (Viridiplantae) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-003.V002 |
Phylogenetic relationships among the recursively generated clusters in "Cluster (Viridiplantae)." |
pgdbj_ortholog_db_viridiplantae_taxon.zip
(4.0 KB) |
http://togodb.biosciencedbc.jp/togodb/view/pgdbj_ortholog_db_viridiplantae_taxon#en |
Phylogenetic relationships were obtained from the NCBI Taxonomy Database. |
- |
175 entries |
Data detail
open_in_full
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| A list of image files of planarians analyzed by in situ hybridication and immunohistochemical staining | Plabrain DB | 10.18908/lsdba.nbdc01108-003 |
This list includes file names of images of gene expression pattern by whole-mount in situ hybridication and also protein distribution by immunohistochemical staining in intact planarians or planarian head regions in the regeneration process. A set of the image files is downloadable from "Image files of planarians analyzed by In situ hybridication and immunohistochemical staining". |
planaria_image_list.zip
(1KB) |
http://togodb.biosciencedbc.jp/togodb/view/plabrain_image#en |
Whole-mount in situ hybridication, immunohistochemical staining |
- |
12 |
Data detail
open_in_full
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| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata