| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| RPD link result | KOME | 10.18908/lsdba.nbdc00120-028 |
Results of homology searches against the Rice Proteome Database |
kome_rpd_link_result.zip
(14 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_rpd_link_result#en |
Performed blastn searches with the full-length cDNA clones against the Rice Proteome Database. |
1,258 entries |
Data detail
open_in_full
|
|
| SwissProt search result | KOME | 10.18908/lsdba.nbdc00120-019 |
Results of blastx searches against the Swiss-Prot database |
kome_swissprot_search_result.zip
(30 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_swissprot_search_result#en |
The Swiss-Prot database was used for the searches. |
Performed blastx searches against the Swiss-Prot database.
|
1,286,530 entries |
Data detail
open_in_full
|
| Tos17 link result | KOME | 10.18908/lsdba.nbdc00120-014 |
Relation with Tos17 mutant clones |
kome_tos17_link_result.zip
(49 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_tos17_link_result#en |
The flanking sequences of Tos17-induced insertion mutants obtained from the Rice Tos17 Insertion Mutant Database were used. |
We predicted that there would be relations between the overlapped regions that emerge by mapping both the Tos17 flanking seqeunces and the full-length cDNA clones to the rice genome BAC contigs.
|
2,864 entries |
Data detail
open_in_full
|
| Trimming information | KOME | 10.18908/lsdba.nbdc00120-030 |
Nucleotide sequences that the regions predicted to be poly(A) sites and vector-derived sites were trimmed.
|
kome_trimming_information.zip
(63 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_trimming_information#en | 161 entries |
Data detail
open_in_full
|
||
| UniProt search blastx result | KOME | 10.18908/lsdba.nbdc00120-020 |
Results of blastx searches against the UniProt database |
kome_uniprot_search_blastx_result.zip
(1.4 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_uniprot_search_blastx_result#en |
UniProt Knowledgebase Release 6.3 was used for the searches. |
Performed blastx searches against the UniProt database.
|
42,146 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata