| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data file ⇅ | Simple search URL ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Number of data entries ⇅ | Data detail |
|---|---|---|---|---|---|---|---|---|---|
| GO classification Arabidopsis | KOME | 10.18908/lsdba.nbdc00120-025 |
Results of GO (Gene Ontology) term classifications done based on homology searches against predicted CDSs of Arabidopsis thaliana |
kome_go_classification_arabidopsis.zip
(418 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_go_classification_arabidopsis#en |
The results of blast searches against predicted CDSs of Arabidopsis thaliana were used for GO term classifications. |
The GO term classifications were done based on the results of blast searches against predicted CDSs of Arabidopsis thaliana. |
94,013 entries |
Data detail
open_in_full
|
| GO classification GenBank | KOME | 10.18908/lsdba.nbdc00120-023 |
Results of GO (Gene Ontology) term classifications done based on GenBank homology searches |
kome_go_classification_genbank.zip
(4.9 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_go_classification_genbank#en |
The results of GenBank homology searches were used for GO term classifications. |
The GO term classifications were done based on the results of blastx searches against 10 GeneBank divisions. |
1,655,603 entries |
Data detail
open_in_full
|
| GO classification InterPro | KOME | 10.18908/lsdba.nbdc00120-024 |
Results of GO (Gene Ontology) term classifications done based on InterPro motif searches |
kome_go_classification_interpro.zip
(645 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_go_classification_interpro#en |
The results of InterPro motif searches were used for GO term classifications. |
The GO term classifications were done based on the results of InterPro motif searches. |
181,478 entries |
Data detail
open_in_full
|
| Indica genome blast search result | KOME | 10.18908/lsdba.nbdc00120-012 |
Results of blastn searches against indica genome sequences (top hits only) |
kome_indica_genome_blast_search_result.zip
(338 KB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_indica_genome_blast_search_result#en |
Genome sequences of indica rice used for the searches were obtained from the BGI-RIS. |
Performed blastn (blast 2.2.12) searches against the indica rice genome sequences.
|
35,736 entries |
Data detail
open_in_full
|
| InterPro search result | KOME | 10.18908/lsdba.nbdc00120-021 |
Results of motif searches against the InterPro database |
kome_interpro_search_result.zip
(2.1 MB) |
http://togodb.biosciencedbc.jp/togodb/view/kome_interpro_search_result#en |
InterPro release 8.0 was used for the searches. |
Performed motif searches against the InterPro database.
|
110,589 entries |
Data detail
open_in_full
|
| Data name | Database name | DOI | Description of data contents | Data file | Simple search URL | Data acquisition method | Data analysis method | Number of data entries | Data detail |
List of Data Metadata