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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data file ⇅	Simple search URL ⇅	Data acquisition method ⇅	Data analysis method ⇅	Number of data entries ⇅	Data detail
Exon	ASTRA	10.18908/lsdba.nbdc00371-003	Exons in variants	astra_exon.zip (5.9 MB)	http://togodb.biosciencedbc.jp/togodb/view/astra_exon#en	For the five organisms (H. sapiens, M. musculus, D. melanogaster, and A. thaliana, C. elegans) other than O. sativa, cDNA sequences were obtained from UniGene database. For the UniGene cDNAs, we chose those sequences that presumably code for mature protein coding sequences (CDSs) according to the annotation. For O. sativa, a full-length 32 k cDNA clone set and information of coding sequences were obtained from the Laboratory of Gene Expression, Department of Molecular Genetics, National Institute of Agrobiological Sciences (Kikuchi et al., 2003; ftp://cdna01.dna.affrc.go.jp/pub/data/CURRENT). The genomic sequences of H. sapiens, M. musculus, D. melanogaster, and A. thaliana were obtained from NCBI (ftp://ftp.ncbi.nih.gov/genomes/). The genomic sequences of C. elegans and the draft contigs of O. sativa were obtained from Sanger Center (ftp://ftp.sanger.ac.uk/pub/) and TIGR Institute (ftp://ftp.tigr.org/pub/data/Eukaryotic_Projects/o_sativa/annotaion_dbs/pseudomolecules/version_3.0/), respectively.	As the first, mapping between full-length cDNAs and genome sequences by MEGABLAST. Following that, convertion to mapping data into bit arrays, detection of splicing patterns and distribution to the types.	676,111 entries	Data detail open_in_full
Locus	ASTRA	10.18908/lsdba.nbdc00371-001	List of locus and splicing patterns in respective locus	astra_locus.zip (887 KB)	http://togodb.biosciencedbc.jp/togodb/view/astra_locus#en	For the five organisms (H. sapiens, M. musculus, D. melanogaster, and A. thaliana, C. elegans) other than O. sativa, cDNA sequences were obtained from UniGene database. For the UniGene cDNAs, we chose those sequences that presumably code for mature protein coding sequences (CDSs) according to the annotation. For O. sativa, a full-length 32 k cDNA clone set and information of coding sequences were obtained from the Laboratory of Gene Expression, Department of Molecular Genetics, National Institute of Agrobiological Sciences (Kikuchi et al., 2003; ftp://cdna01.dna.affrc.go.jp/pub/data/CURRENT). The genomic sequences of H. sapiens, M. musculus, D. melanogaster, and A. thaliana were obtained from NCBI (ftp://ftp.ncbi.nih.gov/genomes/). The genomic sequences of C. elegans and the draft contigs of O. sativa were obtained from Sanger Center (ftp://ftp.sanger.ac.uk/pub/) and TIGR Institute (ftp://ftp.tigr.org/pub/data/Eukaryotic_Projects/o_sativa/annotaion_dbs/pseudomolecules/version_3.0/), respectively.	Genes were identificatified by mapping locus and cDNA annotations	17,034 entries	Data detail open_in_full
Splicing pattern	ASTRA	10.18908/lsdba.nbdc00371-004	The patterns of alternative splicing/transcriptional initiation	astra_splicing_pattern.zip (1.2 MB)	http://togodb.biosciencedbc.jp/togodb/view/astra_splicing_pattern#en	For the five organisms (H. sapiens, M. musculus, D. melanogaster, and A. thaliana, C. elegans) other than O. sativa, cDNA sequences were obtained from UniGene database. For the UniGene cDNAs, we chose those sequences that presumably code for mature protein coding sequences (CDSs) according to the annotation. For O. sativa, a full-length 32 k cDNA clone set and information of coding sequences were obtained from the Laboratory of Gene Expression, Department of Molecular Genetics, National Institute of Agrobiological Sciences (Kikuchi et al., 2003; ftp://cdna01.dna.affrc.go.jp/pub/data/CURRENT). The genomic sequences of H. sapiens, M. musculus, D. melanogaster, and A. thaliana were obtained from NCBI (ftp://ftp.ncbi.nih.gov/genomes/). The genomic sequences of C. elegans and the draft contigs of O. sativa were obtained from Sanger Center (ftp://ftp.sanger.ac.uk/pub/) and TIGR Institute (ftp://ftp.tigr.org/pub/data/Eukaryotic_Projects/o_sativa/annotaion_dbs/pseudomolecules/version_3.0/), respectively.	As the first, mapping between full-length cDNAs and genome sequences by MEGABLAST. Following that, convertion to mapping data into bit arrays, detection of splicing patterns and distribution to the types.	156,654 entries	Data detail open_in_full
Graphical abstract	AT Atlas	10.18908/lsdba.nbdc01162-004	Graphical abstracts (flow chart) in the Technology Development projects of the Targeted Proteins Research Program (TPRP), which is drawn by use of Cell Illustrator. The graphics are in CSML format. One project includes one to six subject(s), and there is a CSML file for every subject.	at_atlas_csml.zip (1.22 MB)	-	-	-	15 entries	Data detail open_in_full
Image File	AT Atlas	10.18908/lsdba.nbdc01162-005	Graphical abstracts (in PNG format) for the Technology Development projects of the Targeted Proteins Research Program (TPRP). One project includes one to six subject(s), and there is a PNG file originally drawn by Cell Illustrator for every subject.	at_atlas_png.zip (5.37 MB)	-	-	-	15 entries	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data file	Simple search URL	Data acquisition method	Data analysis method	Number of data entries	Data detail