データ一覧 | LSDBアーカイブ

List of Data Metadata

Showing 131 to 135 of 416 entries

Show entries Advanced Search

Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data file ⇅	Simple search URL ⇅	Data acquisition method ⇅	Data analysis method ⇅	Number of data entries ⇅	Data detail
ORF Sequence	GENIUS II	10.18908/lsdba.nbdc00471-003	ORF sequence (amino acid)	genius_orf_sequence.zip (164 MB)	http://togodb.biosciencedbc.jp/togodb/view/genius_orf_sequence#en	RefSeq		783495	Data detail open_in_full
PDB Alignment	GENIUS II	10.18908/lsdba.nbdc00471-004	It links to the PSI-BLAST alingment information between PDB and intermediate sequences	genius_pdb_alignment.zip (23 KB)	https://togodb.biosciencedbc.jp/togodb/view/genius_pdb_alignment#en	PDB, nr-aa	We conducted PSI-BLAST search between PDB and intermediate sequences (nr-aa).	4181	Data detail open_in_full
Genetic and bibliographic information	GenLibi	10.18908/lsdba.nbdc01093-001	Information of gene functions and their related diseases and phenotypes that were obtained from the JST bibliographic information.	genlibi_en.zip (12 KB)	http://togodb.biosciencedbc.jp/togodb/view/genlibi_en	Articles related to genes were obtained from the bibliography database (JDream II) which was run by JST.	Information on genes and its ralated diseases and phenotypes was extracted from the contents of the articles.	216 entries	Data detail open_in_full
Clustering Table of the genome insert site of Drosophila GAL4 enhancer trap lines (Cluster List)	GETDB	10.18908/lsdba.nbdc00236-003	Cluster data in which the insert positions of the Drosophila GAL4 enhancer trap element are clustered by the closeness of their positions from each other. 2,099 clusters.	getdb_cluster.zip (56KB)	http://togodb.biosciencedbc.jp/togodb/view/getdb_cluster#en		Mapping by Blast (using the genome sequence (Release 3.1) sequenced by Berkeley Drosophila Genome Project (BDGP)/Celera as the target genome)	2,099 entries	Data detail open_in_full
Expression image data of Drosophila GAL4 enhancer trap lines	GETDB	10.18908/lsdba.nbdc00236-004	3,075 expression image data by developmental stages of Drosophila Images are classified into the following four developmental stages. - Expression image in imaginal disc - Expression image in embryo - Fluorescence expression image in GFP-dyed larva - Expression image in adult The image file is provided in the JPEG format. The file name is composed of "the number corresponding to the line"_"a single alphabet denoting the developmental phase (imaginal disc (d), embryo (e), larva (g), adult (a))""serial number of the images classified by developmental stages in the line".jpg. (Example: 4310_d1.jpg) Correspondence between "the number corresponding to the line" and the DGRC Number is shown in "dgrcnum_imagenum.csv" in the ZIP file.	getdb_images.zip (247MB)	-	-	-	3,075	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data file	Simple search URL	Data acquisition method	Data analysis method	Number of data entries	Data detail