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List of Data Metadata
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Data name ⇅ Database name ⇅ DOI ⇅ Description of data contents ⇅ Data file ⇅ Simple search URL ⇅ Data acquisition method ⇅ Data analysis method ⇅ Number of data entries ⇅ Data detail
Database Dump fRNAdb 10.18908/lsdba.nbdc00452-002

Dump data from database in the original site:
- fRNAdb.pdf: description of database schema
- fRNAdb_schema.sql: database schema
- fRNAdb_table.7z: dump data (original)
- fRNAdbtsv.zip: dump data (tab separeted text)

 Database_Dump
(673 MB) 		-

Main RNA information was acquired from journal papers and existing RNA databases. Computational prediction results were used for genomic loci and secondary structures. Citation information was extracted from PubMed database by searching titles/abstracts including corresponding family names.

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 4 files
Data detail open_in_full
fRNAdb Summary fRNAdb 10.18908/lsdba.nbdc00452-001

Functional RNA Database is a human curated catalog of functional RNAs acquired from journal papers. Each RNA is associated to a base sequence, genomic locus, putative secondary structure, citation, etc.

 frnadb_summary.zip
(46.5 MB) 		http://togodb.biosciencedbc.jp/togodb/view/frnadb_summary#en

Main RNA information was acquired from journal papers and existing RNA databases. Computational prediction results were used for genomic loci and secondary structures. Citation information was extracted from PubMed database by searching titles/abstracts including corresponding family names.

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 510,055 entries
Data detail open_in_full
Mapping Information fRNAdb 10.18908/lsdba.nbdc00452-004

Mapping results on genomes of 4 species
- dm3_*.zip: Drosophila_melanogaster
- hg18_*.zip: Homo_sapiens
- mm9_*.zip: Mus_musculus
- rn3_*.zip: Rattus_norvegicus

 Mapping_Information
(120 MB) 		-

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 12 files
Data detail open_in_full
RNA secondary structure image fRNAdb 10.18908/lsdba.nbdc00452-005

RNA secondary structure images
- png.zip: RNA secondary structure images (PNG)
- pdf.zip: RNA secondary structure images (PDF)
- thumbnail.zip: Thumbnails of RNA secondary structure images

 RNA_secondary_structure_image
(9.6 GB) 		-

From "Sequence Data"

Predicted by using CentroidFold (only when possible)

 3 files (Each zip file contains 338,167 image files.)
Data detail open_in_full
Sequence Data fRNAdb 10.18908/lsdba.nbdc00452-003

Functional RNA sequence files (FASTA)
- sequence.zip: Aggregation of the following files
- mirna.zip: miRNA sequences
- ncrna.zip: ncRNA sequences
- shortread.zip: Sequences from short read sequencer
- Other: Sequences of 10 species

 Sequence Data
(102 MB) 		-

Acquired from journal papers and existing RNA databases.

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 14 files
Data detail open_in_full
Data name Database name DOI Description of data contents Data file Simple search URL Data acquisition method Data analysis method Number of data entries Data detail