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Data name Database name DOI Description of data contents Data file Simple search URL Data acquisition method Data analysis method Number of data entries Data detail
Results of de-novo and Motif activity analyses FANTOM5 10.18908/lsdba.nbdc01389-005.V003

Analysis results of TFBS motif near TSS


  • de-novo motif analysis with HOMER etc.

  • Significance of the correlation between transcriptional activations mesured by CAGE and de-novo motif/known TFBS motif (registered in JASPAR)

Motifs
(6.2 GB)
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JASPER motif search
HOMER motif analysis

400 files
Data detail open_in_full
Sample ontology, GOstat and ontology term enrichment FANTOM5 10.18908/lsdba.nbdc01389-006.V003

The ontology to express samples in phase2.0
It is based on Cell Ontology, Disease Ontology and Pan-vertebrate Uberon Ontology. The file format is OBO.

Ontology
(1.8 MB)
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2 files
Data detail open_in_full
Summary_CAGEScan FANTOM5 10.18908/lsdba.nbdc01389-016.V003

The summary of CAGEscan experiments assembled in every DNA sequence library

fantom5_summary_cagescan.zip
(4.64 KB)
http://togodb.biosciencedbc.jp/togodb/view/fantom5_summary_cagescan#en

CAGEscan (http://fantom.gsc.riken.jp/protocols/nanocage.html)

61 entries
Data detail open_in_full
Body text collection First Author's

It is the collection of this reviews' body text. It is provided in doc format and txt format.
In simple search, you can view the body text and link doc/txt files and figures.

fa_collection.zip (file list)
(6.6 MB)
http://togodb.biosciencedbc.jp/togodb/view/fa_collection#en

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1279 entries
Data detail open_in_full
Figure collection First Author's

It is the collection of figures in reviews.
Figure itself is provided in jpeg format. Thumbnails are provided in png format.

format_jpg.zip (jpg format)
(465 MB)
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2259 entires
Data detail open_in_full
Data name Database name DOI Description of data contents Data file Simple search URL Data acquisition method Data analysis method Number of data entries Data detail