ChIP-Atlas: Target genes

Potential target genes for Rfx3

Query protein: Rfx3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7671906 | Embryonic brains
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rfx3's Target genes

◢ Rfx3: Average

◣ SRX7671906: Embryonic brains

◢ SRX7671907: Embryonic brains

◢ SRX1161945: MIN6B1

◢ Rfx3: STRING

Sema4b
Sik3
Pafah1b2
Cnih2
Ssbp2
Tox2
Zdhhc1
Rfx1
Tmx4
Wdr90
Hydin
Muc1
Chd4
Ncoa5
Sdcbp
Ccdc30
Fhad1
Anks3
4930451G09Rik
Sik1
Map9
Mks1
Tppp3
Pold3
Mapre3
Spef2
Fam227b
Dtwd1
Gar1
Bbs5
Ccdc57
Fbxw7
Pnma1
Wfdc3
Dnttip1
Dync2h1
Dcun1d5
Ufsp2
1700029J07Rik
Lrriq1
Pigx
Cep19
9530077C05Rik
Eaf2
Xrcc1
Pinlyp
Eif2b2
Wdr34
Samd4b
Gmfg
Map1a
Nudt2
Kif24
Srek1
Poll
Dpcd
Cfap20
Cfap44
Dnajc16
Casp9
Kifbp
B9d1
Pin1
Cfap298
Dync2li1
Rundc1
Ptges3l
Dyrk1a
3110082I17Rik
Wdr31
Cfap65
Tctn2
Syt5
Ropn1l
Fos
Map6
Rfx3
Pofut2
Dyrk1b
Fam214a
Marchf9
Cdk4
Tctex1d2
Ccdc181
Ccdc39
Dusp18
4921536K21Rik
Mink1
Arl6
Morn2
Dhx57
Nr2f2
Sipa1l1
Tecpr2
Cinp
Akap11
Lmbrd1
Mlec
Saxo2
Efl1
Wdr66
Lrrc49
Agtrap
Lfng
Prr7
Csnk1g2
Josd2
Aspdh
Dyrk3
Rer1
Morn1
Orai3
Ppm1e
Prdm4
Ccdc13
Mapk8ip1
Nucb2
Ankrd13d
1700030J22Rik
Brms1
B4gat1
Dad1
Abhd4
Wdr27
1600012H06Rik
Slc6a19
Meig1
Dclre1c
Ptpn13
Txndc17
4933427D14Rik
Eif4a3
Gdf1
Cers1
Ttll10
Ube2o
H1f10
Prr3
Gnl1
Foxj1
Tmem138
Cyb561a3
Hspbp1
Fez1
Prkcsh
Ccdc151
Tsnaxip1
Ranbp10
Fanci
E4f1
Pi4k2a
Morn4
Etfbkmt
Usp30
Hspa12a
Eno4
Nek2
Rtca
Dbt
Myg1
Lmtk3
Nup50
Gcc2
Caly
Rpl30
Stk32c
Lrrc27
Fam131a
Wdr60
Ccdc158
Mindy4
Phc2
Fam204a
Gstt2
Tasp1
Ccdc113
Ap3m2
Ywhaz
Pltp
Iqsec1
Lrrc73
Dixdc1
Prepl
Camkmt
Ccdc34
Cfap36
Jam3
Tmem9
Irak1bp1
Gtf2f1
Cfap54
2410004P03Rik
Cep112
Elmod2
Ubn2
Rnf141
Cherp
B9d2
Chchd6
Klhl18
Kif9
Sde2
Zfp24
Itsn1
Cryzl1
Cetn4
Bbs12
Cplane2
Pcgf1
Rara
Pak1ip1
Mafg
Sclt1
D3Ertd751e
Crnkl1
Cfap61
Stoml2
Mbd4
Ift122
Katnal2
Marchf8
Wdfy1
Nap1l1
Rsph1
Morn3
Cbx5
Usp2
Cep162
Oscp1
Jund
Iqcn
Ccdc184
Asb8
Mettl15
Kif18a
Ankef1
Klhdc10
Sun3
Gm11992
Wdr78
Mier1
Zc3h3
Cnpy3
Lca5l
Lrrc56
Hras
Sirt3
Psmd13
Wdr35
Sf3a1
Ccdc157
Tbc1d32
Cfap43
Tmc3
Tada2b
Ccdc96
Ankfy1
Ccdc65
Rnf32
Rhbdd2
Brd3os
Mok
Spats1
Tsga10
Lrrc6
Bbs1
Smg7
Ubxn6
Hdgfl2
Dmwd
Smpd2
Ppil6
Trim2
Naa40
Mtf1
Gnb2
Ssc5d
Nat14
Maats1
Cox17
Ddx24
1700037H04Rik
Iqch
Aagab
Prkar1b
Dnaaf5
Ap1m1
Armc3
Braf
Oxnad1
Dph3
Cfap97d2
Traf3ip1
Zfp523
Timm10
Smtnl1
Eri3
Ndufs5
Rgl1
Arpc5
Tubgcp3
Tomm7
Mycbp
Spata7
Agbl3
Gemin8
Dnah2
Ap1s1
Ralgapa1
Ing1
Cars2
Cabin1
Lsm10
Tube1
Fam229b
Efcab1
Camk2a
Cfl1
Trub2
Acap2
Ift57
Spsb2
Cfap221
Mrpl10
Lrrc46
Ppp1r7
Pask
Gpn3
Fam216a
Ppp2r1a
Tmem216
Hat1
Cfap161
Dynll1
Mapre2
Spef1l
Dffb
Cep104
Trip4
Csnk1g1
Mib2
Prkar1a
Ebna1bp2
Cfap57
Ctxn1
Gpsm3
Rhpn1
Mpc2
Dcaf6
Ptdss2
Gtf3c4
Uvrag
Ipo4
Armc9
AI429214
Pifo
Chchd3
1110051M20Rik
Rnf182
Dnajc1
Kcnn1
Mark3
Gm12500
Ampd2
Neurl4
2810408A11Rik
Fndc11
Gde1
Trit1
Dlec1
Lrrc23
Ddx41
Kcnip3
Nme7
Blzf1
Cdkl4
Pgap3
Ttll9
Parp4
Cenpj
Pick1
Pitpnm1
Cdk2ap2
Gsg1
Tnpo1
1700010I14Rik
Plch1
Dbn1
Ttc41
Hsp90b1
Dagla
Ak1
Fam151b
Id2
Parp8
Dnajc15
Zmynd10
Rassf1
Nprl2
Cyb561d2
Msmo1
Dnajc27
Peli1
Sertad3
Tbc1d19
Dlg4
Hsdl1
Dnaaf1
Cdk9
Katnal1
Nsmce1
Klhdc9
Ripor1
Trim39
Ehd1
Celf3
Lins1
Ttll3
Odf2
Cfap74
Ccpg1os
Ccpg1
Dpy19l2
Zfyve28
Cfap99
Zbtb46
Actr6
Mrps9
Lrguk
Nsdhl
Cetn2
Ywhaq
Tmem167b
Psap
Kdelr3
Ift22
Arid4a
Prmt5
Aqp4
Slf1
2210408I21Rik
Drc1
Adgra1
Spice1
Efhc1
Gtf2e2
Lmna
Ap3d1
Ccdc187
Rlf
Ovca2
Hic1
Phf20
Sec61a2
Nek11
Aste1
Traf3
Ift52
Alms1
Rap2a
A930007A09Rik
Nkiras2
Dnajc7
1700094D03Rik
Tbcel
Slc4a8
Galk2
Cops2
Kmt5c
Pak4
Epb41l4a
Tekt4
Fank1
Dhx32
Abhd2
Mthfr
Clcn6
Ppp1r16a
Foxh1
Cenph
Tctn3
Entpd1
Sec16a
Skiv2l
Nelfe
Ttc26
Iqca
Leng8
Dnajc10
Cfap69
Rfc5
Tfip11
Dcp1b
Tmem107
Ubxn11
Taok2
Mfsd4b4
Stx18
Hsp90aa1
Mxi1
Mlf1
Orai2
Micos10
D230025D16Rik
Glipr1l3
Caps2
4930505A04Rik
Ift81
Fam90a1b
Apoo
Map3k12
Ccdc126
Timm13
Ywhae
Ptges2
Spata2
Rnf114
Uhrf1
Arrdc5
Ppil4
Slc25a3
Stpg1
Nipal3
Tmem209
Ssmem1
Sf3b5
Stk11ip
Kiz
Ppp5c
Thbs3
Mtx1
H13
Tmem218
Ccno
Tmem231
Spata6
Dnaaf2
Dhx16
Rem2
Mapk15
Rpn1
Pbx4
Kif6
Myo1e
Afg1l
Capn10
Nbr1
Brca1
Cenpf
Ccar2
Daam1
Knop1
Iqck
Spcs1
Glt8d1
Trip12
Fbxo36
Fbf1
Hspa2
Marchf10
Dnah10
Abi2
Tex9
Ift88
Plekhb1
Srf
Intu
Rrp12
Fam227a
Cby1
Acox3
Msi1
Nova2
Cyth2
Glipr1l1
Sgsm1
Zfp287
Qtrt2
Ccdc191
Odc1
Derl1
Ccnc
Ubxn2b
Gtf3c1
D430042O09Rik
Pomt2
Gstz1
Srfbp1
Bub1
Cdca4
Ahi1
Eif2s1
Atp6v1d
Copz1
Ndrg4
Rasal2
Rtl6
Wdpcp
Mdh1
Dnajc24
Med9
Lyrm4
Fars2
Tnks
Slc25a14
Thnsl1
Enkur
Snrpd2
Qpctl
Dennd2a
Timm21
Fbxo15
Stxbp4
Cox11
Zswim2
Fscn2
Med31
4930563E22Rik
Aopep
Cep128
Pspc1
Dnaaf3
Crocc2
Rhobtb2
Cacfd1
Pkig
Wars2
Igsf11
Fam98b
Mast3
Phc1
Klhl7
Naa20
D5Ertd579e
Cplane1
Dnah11
Stk33
Kif3b
Mrpl39
Dym
Hmgcr
Wdr13
Mafa
Zfp36l2
Pde4a
Mfrp
C1qtnf5
Spg21
Notch1
Rab11fip2
Zc2hc1c
Acyp1
Hmgn2
Cfap410
Mocs3
Dpm1
Ppp1r12c
Wwox
Rpl35
Arpc5l
Tsen2
Ankrd54
Sgta
Stx8
Cfap52
Coq3
Coa8
Bag5
Ttc34
Dusp6
Bbs9
Ruvbl1
Sdccag8
Cep170
Mapk10
Rabl2
Hsph1
Ulk4
Repin1
Gm5111
U2af2
Ccdc106
Fgr
Cnnm2
Deup1
Dnal1
Rsph4a
Calm2
Lpin2
Lrrfip1
Cmtr2
Nsun7
Glb1l2
Rfx2
Cdkl1
Smc6
Gen1
Arf2
Pik3cd
Spag1
Nme5
Wdtc1
Fam110a
Cystm1
Psmc3ip
Gnaz
Zswim1
Rnf5
Agpat1
Slc9a8
Get1
Ccdc180
Bdh1
Cpd
Zfp407
Cluap1
1700037C18Rik
Ecrg4
Tcea2
Sox18
D130043K22Rik
Nsmf
Pcsk1n
Dner
Adgb
Tufm
Zdhhc23
Pik3r2
Tedc1
Crip1
Zeb1
Cdc37
Ttc21a
Gorasp1
Ano3
Smpd3
Sap18b
Sap18
Rrp7a
Trim9
Safb2
Safb
Ankrd42
Gdf11
Lbhd2
Gas2l1
Rasl10a
Odf2l
Wdr7
Usp29
Peg3
Tpgs1
Madcam1
Togaram1
Klhl28
Smc1b
Fam81a
Zfp688
Itpkc
Coq8b
Rdh5
Bloc1s1
Dnaja1
Erf
Nbas
Shq1
Ift172
Fndc4
Sorbs2
Mrpl22
Gemin5
Wdr17
Tmem89
Rsph3b
Nmb
Pdgfa
Kpna1
Dmkn
Qsox2
Nanos2
Mypop
Btbd9
Ptpn4
Ubxn10
Tmem108
Pla2g2c
Spout1
Lekr1
Mthfd2l
Cog7
Rbks
Babam2
Olfr1344
Fzr1
Agbl4
Wdr54
1700003E16Rik
Ttc13
Arv1
Tcp11
Jun
Map3k14
Slc25a46
Cdc14a
Gata2
Mzf1
Cep164
Dcaf12
Cwf19l2
Acot1
Aspm
Serf1
Bdp1
Polk
Cert1
Enkd1
4933405L10Rik
Zc3h10
Rpl41
Rpl24
Dnaaf4
Ppm1g
Nek4
Tmem260
Tent5c
Denn2b
P4ha1
Nfatc1
Esrra
Catsperz
Cipc
Itgb3bp
Efcab7
Gtf2ird2
Tsr1
Sgsm2
Otub1
Ap2a1
Znhit1
Plod3
Rps6kc1
Yipf5
Bcl2l1
Dusp3
Cfap97d1
Arrdc3
Per1
Cfap20dc
Shank3
Spaca9
Ak8
Dnah9
1700016K19Rik
AU041133
Smarcad1
Spata24
Crip2
Nacad
Rsph14
Rab36
Ankrd45
Polr2f
1700088E04Rik
Fam47e
Wdr93
Pex11a
Trim33
Ubl3
Gnl2
Galnt2
Mapkbp1
Fam120b
Zfp819
4930453N24Rik
Tcte1
Zmat2
Rpp38
Acbd7
Xpnpep3
St13
Ankrd6
Axdnd1
Pbx3
Kifc3
Zbed5
Rpf2
Ccdc89
Tulp3
Lyrm1
Dcun1d3
Sfxn2
Arl3
Fam161b
Coq6
1500009L16Rik
Gpr19
Arf3
Tmtc3
Cep290
Zbtb40
Etfrf1
Casc1
Metrn
Antkmt
Lrriq4
Lrrc34
Vwa3b
Dis3l2
Fam187a
Eftud2
Ccdc103
Tekt1
Chn1
Rtn1
Inpp4a
Pgs1
Gatd1
Klhdc8b
Ccdc71
Tmem67
Rbm12b2
Rps15
Apc2
Mcm7
Ap4m1
Tspyl5
Dnal4
Ccdc74a
Tmem29
Tdrp
Ssx2ip
Psma5
Spef1
Akirin1
Copb2
Casp6
Zfp433
Gm32687
E2f8
Sfi1
Plec
Nek5
Mex3c
Crem
Spag6l
Lrriq3
Fpgt
Zfp719
Stk16
Glb1l
Lcorl
Tuba1a
Fkbpl
Atf6b
Cwc25
Cpeb1
Mul1
Ccdc102a
Rnf139
Celf6
Pyroxd1
Cyp46a1
Ift74
Pibf1
Dis3
Fsip1
Map7
Rap1gap
Srp72
Stk35
Gclc
Fbxl2
Usp20
BC005624
Tgfbrap1
AI597479
Ciao3
Slc39a13
Tex45
Pex11g
Adamts1
Pnkd
Yeats2
Btrc
Cxxc1
Wfdc1
Dnah7a
Hnrnpf
Mfsd4b1
Spata17
Gpatch2
Ano6
Faap24
Cfap45
Stx2
Cep135
Gm1673
Katnb1
Dnajc30
Bud23