ChIP-Atlas: Target genes

Potential target genes for Rfx3

Query protein: Rfx3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1161945 | MIN6B1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rfx3's Target genes

◢ Rfx3: Average

◢ SRX7671906: Embryonic brains

◢ SRX7671907: Embryonic brains

◣ SRX1161945: MIN6B1

◢ Rfx3: STRING

Orai2
Ccdc181
Bbs1
Mks1
Bbs5
Msmo1
Rundc1
Ptges3l
Cep162
Ctxn1
Arl6
Cplane2
3110082I17Rik
Dync2li1
Zdhhc1
Sdcbp
Wdfy1
Rnf32
1110051M20Rik
Muc1
Wdr34
Wdr31
Klf2
Cabin1
Pkig
Elmod2
Mafg
Pold3
Mettl15
Kif18a
Pigx
Cep19
Cetn4
Bbs12
Wfdc3
Dnttip1
Igsf11
Tmem237
Oxnad1
Dph3
Fam214a
Wdr60
Etfrf1
Casc1
Fndc11
Fank1
Dhx32
Jakmip2
Ppp1r16a
Foxh1
Trub2
Sf3a1
Ccdc157
1700010I14Rik
Pin1
Nbr1
Brca1
Gar1
Iqsec1
Stk32c
Lrrc27
Acox3
Dner
Stx2
Hsdl1
Dnaaf1
Cyp46a1
Katnal1
Pnkd
Dync2h1
Dcun1d5
Gnaz
Ufsp2
1700029J07Rik
Irak1bp1
Dagla
Cfap44
Ccdc34
Samd4b
Gmfg
Srek1
Lca5l
Phf20
Gstt2
Klhl18
Kif9
Pnma1
Tecpr2
Cinp
Spata6
Kdelr3
Cenpf
Prkar1b
Dnaaf5
Dyrk3
Lrrc73
Ptdss2
Ccdc74a
Dpy19l1
Gde1
Spef1l
Matk
Ropn1l
Thnsl1
Enkur
Whrn
Marchf8
Pofut2
Tnpo1
Maats1
Morn2
Dhx57
Poll
Dpcd
Tsnaxip1
Ranbp10
Meig1
Dclre1c
Caly
Saxo2
Efl1
Nek11
Aste1
2900026A02Rik
Map1a
Rhbdd2
Rab11fip2
Lmtk3
Zfp24
Pak4
Fam227b
Dtwd1
Fanci
Chn1
Tctex1d2
Cnpy3
Hdac11
Wdr90
Gtf2f1
B9d1
Igsf9
Rnf141
Naa40
Lyrm4
Fars2
Dad1
Abhd4
Ccdc57
Ube2o
Dnajc1
Pifo
Gsg1
Arl4a
Foxj1
Myg1
Ngef
Zc3h3
Dynll1
Shq1
Armc9
Dusp3
Cfap97d1
Ahi1
Tmx4
Tmem209
Ssmem1
Syt5
Iqch
Aagab
Tbcel
Traf3ip1
Dnaja1
Kif23
Fhad1
Tsr1
Sgsm2
Smpd2
Ppil6
Nphp1
Mtln
Prkar1a
Ift57
Prkar2b
Wdr78
Mier1
1700016K19Rik
Micos10
Xrcc1
Pinlyp
Akap11
Cyb561
Cep112
Foxn2
Agtrap
Tsga10
Sema4b
Tube1
Fam229b
Prr7
Negr1
Eml1
Wdr27
1600012H06Rik
Pcgf1
Ift81
Erf
Abi2
Anks3
4930451G09Rik
Mindy4
Phc1
Msi1
Mapk10
Usp29
Peg3
H1f10
Dynlt1b
Kif27
Ccdc65
Hmgn2
Lsm10
Dnajc10
Tmem138
Cyb561a3
Tmem9
Spats1
Ubxn11
Lmna
Ccdc30
Mafa
Map6
Ptpn13
Sik1
Tbc1d19
Spice1
Ubxn6
Hdgfl2
Etfbkmt
Zfp523
Kiz
Trit1
Ralgapa1
Mapre2
Ass1
E4f1
Klhl3
Tada2b
Ccdc96
Eri3
Fam131a
Ywhaq
Id2
Chd4
9530077C05Rik
Neurl1a
Nucb2
Sec61a2
Sik3
Pafah1b2
Cog7
Pick1
Eif2b2
Ddx41
Setd4
Cbr1
Efcab1
Azin2
Cnih2
Pak1ip1
Rnf139
Ebna1bp2
Cfap57
Brd3os
Ovca2
Hic1
Nudt2
Kif24
Mib2
Marchf9
Cdk4
Prdm4
Dnah2
Rlf
Cfap36
Eif4a3
Rtca
Dbt
Sde2
Ankef1
Dcp1b
D130043K22Rik
Dffb
Cep104
Ubxn2b
Rtl6
Rfx1
Ccno
Jam3
Klf4
Spg21
Oscp1
Sgsm1
Ing1
Cars2
Wdr66
Adgb
Ssx2ip
Lcorl
Rfc5
Trip12
Fbxo36
Intu
Ift22
Fam98b
Ankrd54
Mfsd4b4
1700030J22Rik
Chrm4
Ccdc39
Ncoa5
Zbtb46
Fsip1
Celf3
Fam81a
Hspa4l
Rpl35a
Iqcg
Trim2
Gemin8
Fbxw7
Fam183b
Stk11ip
Rara
Pcgf5
Fos
AI429214
Parp8
Atp23
Eif5
Mapk8ip1
Ywhaz
Cfl1
Rpn1
Nacad
Nek2
Lrguk
Bub1
Mrpl10
Lrrc46
Iqce
Brat1
Ssbp2
Mast1
Dnajc25
Ush1g
Otop2
Lmbrd1
Ppm1e
Acap2
Rrp7a
Dusp18
4921536K21Rik
Sirt3
Psmd13
Hsph1
Rpl30
Serf1
Bdp1
A930007A09Rik
Sytl3
Txndc17
4933427D14Rik
Dmxl2
Katnal2
Rap2a
Tmem17
Zfp36l2
Nphs1
Kirrel2
Prkcsh
Ccdc151
Tdrp
Usp30
Rsph1
Mthfr
Clcn6
Ankrd45
Zdhhc23
Tmem216
Med9
Rfx2
Cdc37
Zfyve28
Cfap99
Rfx3
Odc1
Cdkl1
Mlec
Timm10
Smtnl1
Lrrc10b
Spag1
Dnajc16
Casp9
Cystm1
Sfxn2
Arl3
Eaf2
Sys1
Kcnn1
Nr2f6
Cdkl2
Dynlt1f
Dynlt1c
Ccar2
Fam204a
P4ha1
Sptbn4
Crocc
Stx8
Cfap52
Id1
Actr6
Cacng8
Prepl
Camkmt
Slc25a14
Cmtr2
Map3k12
Ddx59
Ankfy1
Ap1s1
Plin5
Lrg1
Cibar1
Gpsm3
Rabl2
Zswim1
Kifbp
Arfip1
Pkd1
Gcc2
Sipa1l1
Ccdc184
Asb8
Mark3
Mycbp
B9d2
Lrrc56
Hras
Spsb2
Armc4
Ywhae
Abhd2
Tcea2
Sox18
Dhx30
Mok
Ehd1
Fam167a
Trip4
Csnk1g1
Itsn1
Cryzl1
Pnmal1
Npcd
Cbx6
Mfn1
Wdr35
Plp2
Pi4k2a
Morn4
Spata2
Rnf114
Spata33
Chmp1a
Tsen2
Stox1
Tfip11
Leng8
Per1
Ndufaf3
Dalrd3
Akirin1
Chchd6
Cfap69
1500009L16Rik
Casp6
Zc2hc1c
Acyp1
Dyrk1b
Ssbp4
Snrpd2
Qpctl
Mapre3
Plxnb1
Tox2
Slc4a8
Sf3b5
Thbs3
Mtx1
Tctn2
Glb1l2
Kifc3
Phc2
Capn10
Knop1
Iqck
Gata2
Gnb2
Dcaf5
Smg7
Rhpn1
Psmc3ip
Hydin
Taf6l
Csnk1g2
Prr3
Gnl1
Dusp6
Cfap410
Axdnd1
Jund
Iqcn
Kmt5c
Map7
Junb
Ptms
Cfap298
4930453N24Rik
Ttll9
Hspa12a
Eno4
Cherp
Ppp1r7
Pask
Safb2
Safb
Tagap1
Tbc1d32
Agbl3
Odf2
Qtrt2
Ccdc191
Mzf1
D630045J12Rik
Cacfd1
Fam151b
Fbxl2
Ccpg1os
Ccpg1
Gtf2e2
Trim36
Wdr47
Elapor1
1700013F07Rik
Ccdc158
Cfap54
Galnt2
Hcn4
Cxadr
Brms1
B4gat1
Pitpnm1
Cdk2ap2
Ttc21a
Gorasp1
Spata24
Cfap58
Dyrk1a
Nsmf
Lrrc49
Nsmce1
Mrpl22
Gemin5
Tmem107
Nmb
Cfap20
Bbs7
Gas8
Dbndd1
E2f8
Uvrag
Rnf5
Agpat1
Eif2s1
Atp6v1d
Cars
Kif3b
Plxnb2
Ankrd13d
Cep43
Aifm2
Vat1
Nap1l1
Parp4
Cenpj
D5Ertd579e
Nanos2
Mypop
Skiv2l
Nelfe
Tasp1
Stxbp4
Cox11
Phyhipl
Ttll10
Cfap97d2
Lins1
Tusc3
Stk19
Dxo
Vps13a
Cep295nl
Klhdc8b
Ccdc71
Zfp174
Olfr15
Lekr1
Ift74
2610028H24Rik
Alms1
Ctnna2
Arf3
Pum1
Tmem260
Taok2
Nqo1
Ak1
Rnf182
Gnl2
Sgta
Dnaaf2
Pomt2
Gstz1
2610301B20Rik
Map9
Sclt1
D3Ertd751e
Dym
Celf6
2610524H06Rik
Josd2
Aspdh
Ap1m1
Dynlt1a
Sertad3
Dlg4
Rtl5
Sorbs2
Dhx16
Tbc1d16
Ccdc40
Cfap46
Nme5
Klhl7
Acot1
Rer1
Morn1
Tmem167b
Ndufs3
Kbtbd4
Rrp12
Sfi1
Ift172
Fndc4
Afg1l
Nup50
Tspyl4
Camk2a
Gtf3c1
D430042O09Rik
Tex9
Gm14685
Spcs1
Glt8d1
Tpgs1
Madcam1
Tent5c
Stk35
Cep135
Celf5
Tmtc3
Cep290
Gtf3c4
Pds5b
Fbxl14
Cibar2
Ubn2
Cfap65
Tob1
Hspbp1
Sec61b
Alg2
Dlec1
Slf1
2210408I21Rik
Zfp688
Cfap43
Cenph
Gm12500
Ampd2
Ap3d1
Lrriq3
Fpgt
Mpp2
Lrrc6
Zfp184
Ap3m2
Ift88
Plch1
Tpm3
Rsph14
Rab36
Spout1
Tmem231
Mink1
Stk16
Glb1l
Wdpcp
Mdh1
Hook2
1700019D03Rik
Cdc25b
Slc17a7
Maco1
Jun
Pkp4
Ccdc148
Rgl1
Arpc5
Rhobtb2
Dbp
Hmgcr
Mical3
Ing2
Kcnh3
Tctn3
Entpd1
Sdccag8
Cep170
Dnal1
Dnah9
Cdk9
Aldh3b1
Wdr13
Mcm7
Ap4m1
Qars
U2af2
Ccdc106
Dusp8
Ndrg4
Dnajc27
Riiad1
Ppp1r12c
Agbl4
Ndufs5
Orai3
Otub1
Trim39
Ppp2r1a
Nsdhl
Cetn2
Dmwd
Apbb1
Churc1
Entpd7
Sec16a
Myt1
Pak6
Klf10
Trim41
Hat1
Aopep
Enkd1
4933405L10Rik
Slc27a1
Nxnl1
Klhdc10
Rpgrip1l
Fto
Fam222a
Pcsk1n
Mast3
Dnah11
Poln
Haus3
Gpn3
Fam216a
Fzr1
Ptges2
Bbs9
Ankrd42
Ddx24
Tppp3
Zc3h14
Efhc1
Tcp11
Fam90a1b
Apoo
Tmem53
Armh1
Pnmal2
Mfsd4b1
Dnajc15
Cerkl
Ulk4
Xpr1
Fscn2
Efcab10
Daam1
Pcp4
Mrpl39
Fbxw9
Gdpgp1
Cib1
R3hdm2
Ssc5d
Nat14
Denn2b
Ube4b
Snx13
Nme9
Wdr19
Lman2l
Arrdc3
Crip2
Pcm1
Fam187a
Eftud2
Ccdc103
Prrt1
Ppt2
Pik3r2
Mapk7
Zfp664
Ccdc92
Bcl2l1
Lyst
Tex26
Cluap1
1700037C18Rik
Rpp38
Acbd7
Otud3
Cfap74
Fsd1l
Ripor1
Lmln
Zfhx2
Fig4
Ak9
Rpl36
Micos13
Ogfod2
Arl6ip4
Bcar1
Rsph4a
Foxo6
Psma5
Wfdc1
Spata13
Ttc26
Smc6
Gen1
Syna
Clip2
Tgfb3
Ift43
Rab28
Ralgds
Tmed10
Mrps9
Pold2
Tent4a
Ap1g2
Slc6a12
Mlf1
Gmppb
Amigo3
Nkiras2
Dnajc7
Pspc1
Fzd3
Fbxo16
Eml2
Cipc
Pef1
Togaram1
Klhl28
Qsox2
Ttll13
Cdk5r2
Sun3
Gm11992
Uhrf1
Arrdc5
Cmip
Dnajb2
A630095N17Rik
Ccdc134
Tulp3
Kcnip3
Prrc2b
Mpc1
Tex264
Cops3
Crnkl1
Cfap61
Zfp287
Cep126
Lrpprc
Ppp5c
Cyth2
Ift52
Ccdc187
Six2
Trdmt1
Nme7
Blzf1
Mapk15
Ndufaf4
Zc3h10
Rpl41
Derl1
Phtf1
Tekt4
Slc35a2
Ppm1m
Rbks
Babam2
Rtn4rl1
Dph1
Fkbpl
Atf6b
Fam161a
Pitpna
Abcg2
Wdr7
Tom1l2
Drc3
Arhgap39
Gng4
Stx18
Neurl4
2810408A11Rik
Ipo4
Tuba1a
Mbnl2
4930505A04Rik
Fbf1
Enox1
Rasal2
Septin5
Gp1bb
Ttll1
Gnai2
Dnal4
Psap
Copg1
Baz2a
Tubgcp3
Polr2f
1700088E04Rik
Notch1
Smpd3
Znrf1
H13
Dnaaf3
Prkaa1
Arl2bp
Trim46
Krtcap2
Plet1
Cbx8
Ccdc126
Slc12a5
Mxd3
Cplane1
Map3k14
Cdca4
Yeats2
Mbd4
Ift122
Trim37
Nr1d1
Nubpl
Chmp4b
Tm9sf2
Ccdc138
Inpp5f
Lrfn4
Nemp1
Glipr1l1
Arid4a
Dstn
Lrif1
Saraf
Usp6nl