ChIP-Atlas: Target genes

Potential target genes for Cdk9

Query protein: Cdk9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX620288 | NIH/3T3
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Cdk9's Target genes

◢ Cdk9: Average

◢ SRX104410: ES cells

◢ SRX236483: ES cells

◢ SRX020971: Macrophages

◢ SRX020972: Macrophages

◢ SRX020973: Macrophages

◢ SRX020974: Macrophages

◢ SRX1550527: Macrophages

◢ SRX1550528: Macrophages

◢ SRX255482: MEF

◢ SRX277329: MEL

◢ SRX3200439: mESC derived haemogenic endothelium

◢ SRX3200440: mESC derived haemogenic endothelium

◢ SRX3200441: mESC derived haemogenic endothelium

◢ SRX620286: NIH/3T3

◢ SRX620287: NIH/3T3

◣ SRX620288: NIH/3T3

◢ SRX620289: NIH/3T3

◢ SRX735308: Th1 Cells

◢ SRX735309: Th1 Cells

◢ SRX735310: Th2 Cells

◢ SRX735282: Unclassified

◢ SRX735292: Unclassified

◢ Cdk9: STRING

Sspn
Pgk1
Il31ra
Kpna1
Dchs2
Ccn1
Errfi1
Ifrd1
Egr1
Serpine1
Flnc
Ier2
Actg1
Thbs1
Actb
Nr4a1
Dusp1
Dusp5
Ptgs2
Tmem125
Abhd6
Ubc
Vim
Junb
Cldn34d
Olfr806
Mt2
Tpm1
Fos
Dnajb1
Sgk1
Mbd6
Ddit3
Ccn2
Hspa5
Homer1
Btg2
Gadd45g
Mt1
Pknox1
Zyx
Ifna13
Id3
Atf4
Hspa8
Ugdh
Ttc4
Syn2
Csf1
Jun
Zfp598
Dcaf5
Gm13285
Gm13290
Gm13289
Gm13287
Gm13288
Insig1
Wwox
Gm13275
Gm13279
Gm13278
Btg1
Vcl
Vmn2r4
Ier3
Flot1
Fn1
Arc
Celf2
Timp2
Mat2a
Egr3
Prickle1
Tle1
Hmox1
Gtf2i
Zfand5
Gm13272
Trim50
Gm13277
Gm13276
Ifnz
BC005537
Calm1
Rubcn
Fyttd1
Pdlim5
Cbr3
Ier5
Plk2
Dnaja1
Sf3a3
Mcl1
Ccl7
Csf2ra
Aadacl2fm1
Med23
Myh9
Palld
Tmsb4x
Slc2a1
Rdm1
Jund
Iqcn
Lgals1
Nemf
Tab1
Itga5
Tex14
Tob1
Map7d1
Gm3448
Gm3417
Gm3435
Utp14b
Acsl3
Ap1g1
Aaas
Prdx1
Noct
Cav1
Tob2
Smad1
Fyco1
Lyrm2
Mtf2
Oasl1
Ddx5
Cep95
Tcte3
Ermard
Nme1
Hmgcr
Mia2
Sdc4
Sqle
H3f3b
Cdkn2aipnl
Trib1
F3
Srxn1
Prkce
9030025P20Rik
Cltc
Arl8b
H2ac4
H4c2
H3c2
Gm13283
Phlda1
Bod1l
Rps29
Gtf3c3
Mrpl20
Mrps2
1700007K13Rik
Myl12a
Olfr938
Kdm2a
Yap1
Zfp36
1810013L24Rik
Lmna
Blmh
Smo
Fth1
Hexim2
Rasl2-9
Nipbl
Ctnnb1
S100a3
Atp2a2
S100a2
Ankrd40
Rpl10a
Id1
Ftl1
Zswim6
Oxct1
Rel
Traf6
Cobll1
Cdc42ep3
Fem1b
Tiparp
Rgl2
Lrp12
Arl14ep
Nfat5
Notch2
Fosb
Ppia
Utp3
Lrp6
Nrf1
Lbh
Fbxo7
Rcn2
Sox9
Ppp1r15a
Plekha4
Ifi211
H3c11
H2bc22
H2ac22
H1f5
Actr3
H3c6
Frg2f1
Foxj3
Them4
Rtn4
Fubp1
Dnajb4
Tpt1
Dnajc24
Zfp36l2
Drg1
Tox4
Rab2b
Csrp2
Rpl22l1
Eml4
Ctnnd1
Acap2
Eef1a1
Pbld2
Hnrnph3
Azin1
Uspl1
Tcea1
Lsm11
Cul1
Idi1
Ccl2
Tnfrsf12a
Thoc6
Hcfc1r1
Cldn6
Htra2
Dqx1
Aup1
Snx18
H2-DMa
Brd2
Sesn1
Kansl3
Fer1l5
Lox
Camk2d
Cldn12
H3c15
H3c14
H2ac19
H2ac18
Mideas
Chac1
Mrps33
Glis1
Surf6
Nipsnap2
Cpd
Ncbp2
0610012G03Rik
Raf1
Ptbp1
S100a6
S100a5
Guca2b
Qser1
Sfi1
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Vamp4
Baiap2
Actn4
Opa1
Slc35g3
Polr2a
Rnft1
Ccnl1
Pds5b
Ppp2cb
Cdkn1a
Ankrd1
Nabp1
Mterf1a
Ccdc88a
Rpl27
Hbegf
Hrob
4931408C20Rik
Kif21b
H4c3
H1f6
Cipc
Tbp
Psmb1
Fasn
Ulk2
Borcs6
Dgat1
Pten
Gpatch8
Cacybp
Uvssa
Gm13286
Ier5l
Rap2b
Tnfaip6
Tab2
Atp6v1h
Txnrd1
Rab34
Proca1
Rps20
Aacs
Mrps31
Atad2b
Naa16
Rnf11
Dlx2
Srsf1
Hnrnph1
Timp1
Ndufs7
H2bc21
H2ac21
H2ac20
Sec22b
Med7
Pdia3
Catsper2
Sh3glb1
Eif4a2
Mapkbp1
Stx18
Ube2z
Agk
Slc25a3
H3c7
H2bc9
Galk2
Cops2
Plag1
Chchd7
Cebpb
Bhlhe40
Fam133b
Hnrnpu
Slc39a13
Lrig2
Medag
Ttc39b
Cbwd1
Hrh2
Rpl3
Wdr70
Mterf1b
Ddit4
Faf1
Wdr25
Wars
Cyp51
Sgcd
Pcbp2
Rhob
Fus
Tef
Creb1
Ythdf2
Ddhd2
Apc2
Rps15
Sptan1
Cfl1
Ubb
Slc25a32
Dcaf13
Eci1
Rhoq
Uhrf1bp1l
Pex2
Ubtf
Pabpc4
Esyt2
Tlcd2
Ube2a
Tmem267
Cdh12
Scrib
Calcoco1
Fam227b
Dtwd1
Vmn2r102
Zfp143
9430015G10Rik
Clcn4
Rptor
Mrpl44
H2bc6
Eapp
Snx17
Eif2b4
Gtf3c6
H1f2
Ddx23
Prcc
Cnot1
Dync1i2
Phf12
Banp
H4c14
H3c13
H2bc18
Taf12
H4c4
Cpsf1
Srsf2
Mfsd11
Nedd8
Gmpr2
Lima1
Arntl
Copz1
H4c11
H4f16
H2aj
Dusp2
Astl
Tent5c
Tmed2
Phb
Pprc1
Trp53rkb
Ep400
H2bc12
H2ac12
Tbcd
Sepsecs
H1f4
Usp48
Mettl25
Ccdc59
Chmp6
Mrpl19
H3c10
Mtg1
H4c6
H1f3
H4c8
H3c8
H2ac10
S1pr4
Ncln
Eef2
Znfx1
Sp1
H2bc13
H2ac13
H4c12
H2bc15
H2ac15
H2bc3
Pex14
Sharpin
Maf1
Gm35339
Unk
H4bc24
H2bc23
H2ac24
H2ac23
Kif2c
Dapk3
Nop14
Grk4
Ap2m1
Tle3
Ube2j2
Poldip3
Ndufaf5
Esf1
Tmem88
Krr1
Crtc2
Mrpl39
Chmp4b
Atf6
H2ax
Ifrd2
Dcp1a
Med6
Eif2b5
Dhx33
Crebl2
H3c3
Atp5o
Dnajc16
Casp9
Tti2
Sirt4
Pigu
Drg2
Klhl17
Cenps
Dnttip2
Dhx16
H2bc4
H2ac6
Ufl1
Smg8
Tsfm
Fastkd1
Hsph1
Sec61a1
Ndufa9
Akap3
Zc3h6
Naa38
Cyb5d1
Dmap1
Get1
Tmem168
Ubxn1
Get4
Flad1
N4bp2l2
Ndufs4
Tmem107
Fitm2
Sass6
Lrrc59
Retsat
Elmod3
Muc3
H4c17
Rbl2
Zdhhc1
Pold3
Ifng
H2bc14
Zfp637
Cotl1
Usp5
Cdca3
Psmd7
Mff
Rhot1
Psmd3
Snrpc
Zcwpw2
Pcbp1
Azi2
Sde2
Kpnb1
Gtf2b
Rplp0
Ccl1
Hnrnpa2b1
Cbx3
Dffb
Cep104
Proser1
Nhlrc3
Sphk2
Rpl18
Fam83e
Tsnaxip1
Ranbp10
Dpy19l4
Btrc
Rad54l2
Pcif1
Klf7
H4c18
Gpr84
Mtmr10
Fbxl18
Terf2
Odc1
Gsk3a
Napepld
Anapc5
Gatb
Med27
Mapkapk5
Rpp30
Nup153
Bud13
Timm13
Ndufs3
Kbtbd4
Malt1
Eif4e2
Rab33b
Setd5
Pigq
Nhlrc4
Snx5
Mgme1
Tmem101
Cox6c
Phf23
H4c9
H4c1
H2bc11
H2ac11
Dvl2
Trmo
Gpn3
Fam216a
Ndufb8
B4galt7
Rbm39
5730455P16Rik
Mrpl21
Ighmbp2
Slc33a1
Nup54
Rbm17
Scaf1
Rras
Clptm1l
Snrpd3
Gucd1
Palb2
Dctn5
Cul2
Clpb
BC107364
Adpgk
Eif5
Cluh
Pole4
Gabpb2
Cirbp
Chordc1
Mmachc
Kat7
Ccdc163
Rnf123
Prkdc
Mst1
Tmem11
Rpia
Atp5g2
Nutf2
Capn15
Ncl
Kansl2
Nuf2
Usp30
H3c1
H1f1
Rps3a1
Pdcd7
Fam53c
Wdr36
Epg5
Ppp1r10
Mrps18b
Ddx41
Rpl38
Tkfc
Psmg3
Ddb1
Vta1
Setdb1
Gmfb
Stx16
Trp53rka
Ndufc2
Mrpl1
Nelfa
Ppp6c
Herpud1
Sdad1
Tmed9
Adnp
Tmem262
Ska2
Prr11
Yipf2
Timm29
Zbtb37
Sympk
Foxa3
Btbd8
Larp4
Smarca4
St3gal2
Srp68
Alad
Fra10ac1
Zfyve19
Dnajc17
Rps19bp1
Yars
S100pbp
Slc38a2
Slc9a1
Epc1
Ctdp1
Zfp868
Srp19
Eif1
Tyw3
Snrpa1
Eif3c
Cryz
Trip4
Rps8
Taco1
Psd
Fbxl15
Kmt2d
Ptpn6
Grcc10
Ttc41
Hsp90b1
Map1lc3b
Dis3l2
Ccl4
2610001J05Rik
Xpc
Snrpd1
Lsm3
Kbtbd7
Acp2
Gspt1
Btbd19
Puf60
Pole3
Ints12
Gstcd
Vps72
Pip5k1a
Pafah2
Dnajb12
Birc2
Psmd12
Timm50
Nfkbia
Med17
Trdmt1
Rabl6
Gm2237
Vps51
Tmem115
Snw1
Cep128
Pde6d
Cops7b
Psat1
Irak2
Dnajc11
Slc3a2
Klhdc4
Nufip2
Atg16l1
Dus1l
Sp2
Rasip1
Mphosph10
Mcee
Izumo1
Klhl18
Kif9
Phf13
Hjurp
Haspin
A730008H23Rik
Morf4l1
Armc1
Trmt44
Atad5
Trib3
Zfp869
Zfp668
Zfp646
Smarcal1
Fam149b
Ecd
Cdkn2d
Pemt
Rnf7
Hsp90aa1
Zc3h10
Rpl41
Tmem242
Nprl2
Cyb561d2
Zfp988
Eif4a1
Gapdh
Mrpl35
Hnrnpab
Smn1
Luc7l
Borcs7
Vpreb1
Top3b
Mtrex
M6pr
G3bp1
Dhx29
Nubp1
Ccl3
Lars
Dcps
Sfxn5
Sar1b
Zar1l
Tchp
Tatdn3
Nsl1
Brca2
Psmb2
Efcab2
Dcaf10
Knl1
Scnm1
Lysmd1
Tspan4
Snrpe
Polr2l
Srsf5
Tarbp2
Map3k12
Gtf2a1
Pkm
Mvk
Mmab
Ube2g1
Inpp5k
Rprd2
Suz12
Ppip5k2
Gin1
Ccdc77
Mrps15
4933430I17Rik
Lamtor5
Tuba1b
B9d1
Pdss2
Dus2
Ddx28
Olfr819
Rdh14
Chrac1
Brf1
Snrnp27
Arfgap2
Dhx30
Tmem123
Ube3c
Pfdn5
Ahcyl1
Map2k2
Zfp846
Katnb1
Eps15
Tekt2
N6amt1
Dexi
Clec16a
Adprhl2
Zfp189
Rps12
Mrpl50
Hsp90ab1
Ankar
Usp31
Pop7
Tmem214
Ankle2
Zfp36l1
Slc35b4
Nfyc
Zfp963
Slbp
Ppp1r11
Eif3a
Bicd2
Invs
Erp44
Cct4
Secisbp2
Scfd1
P4ha1
Wnk1
Acer3
Lonp1
Catsperd
Cep63
Anapc13
Fam174c
Cct8
Txnl1
Tubb4b
Kmt2a
Ikzf5
Cwc22
Atad2
Acadsb
Olfr62
9530077C05Rik
Rpl5
Gid8
Dido1
Sbno2
Trmt1
Nacc1
Chchd6
Bub3
Urgcp
Tnf
Lta
Trmt10a
Tmem43
Mttp
Chchd4
Tgfbr3l
Snapc2
Mrpl12
Eefsec
Rsrp1
Ormdl3
Aasdh
Commd2
Bms1
Polr2m
Max
Mis12
Derl2
Rabac1
Srek1
Txn1
Pomp
Rad50
Pcnp
Nfe2l2
G3bp2
Rab1a
Clcn7
Med4
Vps18
Mrpl58
Cog7
Ccp110
Tbck
Rint1
Aimp1
Gtpbp2
Cstf1
Aurka
Rpl13
Hus1
Pex3
Adat2
Zfpl1
Hdhd3
Cdca5
Hps5
Gtf2h1
Csgalnact2
Tmem248
Exosc6
Ssbp1
Il2
Taf11
Phf20l1
Pabpc1
Anks1
Hemk1
Zfp866
Zc3hc1
Alg1
Uchl5
Ro60
Cnpy3
Cnot10
Arid1a
Ube4a
Mtres1
Ints5
1810009A15Rik
Cdca4
Slc39a3
Nsrp1
Kctd5
Srcap
Prmt6
Nsa2