ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3301664 | Embryonic limb
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◣ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Tcstv3
Cldn34d
Plekhb1
Abca3
Abca17
E030030I06Rik
Zfp442
Brox
Aida
Eva1b
Ndufs7
Kctd1
Nkx2-6
Tmem125
Tmem18
Foxp1
Adap1
Arl4d
Klhdc8b
Ccdc71
Caap1
Pigt
Dbndd2
Fbxw4
Nek2
Rusc1
Tcirg1
Ndufs8
Rarb
Atxn2
Foxp2
Tmem259
Cnn2
Rplp2
Slc25a22
Pidd1
Mrpl16
Asmt
Serpinh1
Txndc11
Bmt2
Psmd12
Pitpnc1
Fbxo8
Cep44
Slc35d1
Rbks
Babam2
Ndufs1
Eef1b2
Cfl2
Stard3
Ppp1r1b
Tbc1d17
Pnkp
Akt1s1
Homer3
Pknox1
Hoxb3
Ciao2b
Arf4
Pdcl3
Rdm1
Hoxa5
Hoxa3
Hoxa6
Oxnad1
Dph3
Rarg
Maats1
Cox17
Iffo1
Tex14
Zfp937
Knop1
Iqck
Pspn
Clpp
Alkbh7
Gm10130
Rax
Guf1
Sdha
Ccdc127
Spon2
Gtf3a
Rps3a1
Jund
Iqcn
0610009B22Rik
Gm4981
Dux
Rbp1
Ccne1
Lipe
Tradd
Hsf4
Fbxl8
B3gnt9
Eapp
Capg
Pdlim7
Lsm8
Fam32a
Cib3
Supt16
Zfp770
Yars
S100pbp
Il10rb
Kdm6b
Rad9a
Clcf1
Usp37
Cnot9
Wdfy1
Wdr77
Atp5pb
Idh3b
Dnajc19
Kansl2
Pick1
Gtf3c5
Wdr7
3300002I08Rik
Naa35
Eif4ebp2
Rab3a
Mpv17l2
Ifi30
Mdh1b
Fastkd2
Nkx1-1
Dock1
Cuedc1
Taf12
Gmeb1
Nynrin
Dnajc27
Zfp957
Gpi1
Crb2
Rsbn1l
Stk11
Atg9b
Abcb8
Ptch1
Rplp0
Gcn1
Dpp9
Cpa1
Tirap
Mbd2
Cyp46a1
Hoxb1
Gpx4
Tsc22d1
Ppdpf
Hspa5
Mrps33
Irf2bpl
Cox8b
Pla2g15
Hdhd3
Unc50
Coa5
Mmel1
Arih2
Fabp5
Zmiz1
Mcl1
Slc25a11
Rnf167
Pfn1
Eno3
Anxa5
1810062G17Rik
Ssr1
Gga1
Cdkn2aip
Abr
Armc7
Lmx1b
Znrd1as
Ppp1r11
Rnf39
Znrd1
Greb1
Olfr806
Abhd6
Wwox
Setd4
Cbr1
Aadacl2fm1
Kpna1
Esr1
Tecpr1
Slc14a2
Hexb
Sympk
Acacb
Tent5c
Csf2ra
Cox8c
Oasl1
Gzmk
Marchf3
H3c8
Il31ra
Vmn2r102
Slc15a1
H4c8
H2ac10
Pcdh20
H2bc6
Slc7a15
Tmem211
Pibf1
Dis3
Olfr855
Olfr854
Tet2
Gm525
Olfm1
Fbxw7
Akirin2
Sspn
Rad23a
Calr
Cdv3
Ube2s
Adgra2
H3c10
H2bc13
H2ac13
Bmpr1b
H4c3
H1f6
Gcgr
Tmem231
Gabarapl2
H3c2
H2ac4
H1f3
Farsa
Kcnk5
Efnb3
Tmem33
Erdr1
Olfr1274
H4c2
H4c1
H3c1
Nemf
Fam227b
Dtwd1
Camk2n1
H4c6
H3c7
H2bc9
Hivep3
Sbno2
Pald1
H3c3
H2bc3
H4c4
H3c4
Aqp3
Ints3
Zfp949
Socs3
Ccdc171
BC107364
Trim29
H2bc7
H2ac7
Tmem181a
H1f2
Hmox2
Slc43a1
Atp11b
Fubp3
Zfhx2
Thtpa
Uri1
Znfx1
Bbs1
Xbp1
Hoxb13
Tomm5
Clec2g
H3c6
H2bc8
H2ac8
Mtf2
Ssty2
Gm21242
Pdgfrb
Cdx1
Rps29
Lrr1
H4c11
Ifna13
H2bc12
H2ac12
Unk
H3f3b
Maneal
Tm7sf3
Med21
LOC666331
Gm11634
Aldh9a1
Rsph3b
H4c9
H2bc11
H2ac11
Prdx6
Ilf2
Rasip1
Izumo1
Bcl2a1a
Taf13
Ttc39d
Srsf7
Cerk
Zbtb4
Slc35g3
Polr2a
Fut1
Fgf21
Atp5g1
Olfr180
Bcl2a1b
Cmip
Rpgrip1
Mkrn1
Cdk15
Fitm2
H1f1
Tctn1
Ovol2
Notch4
Agpat5
Gm10710
Dchs2
Adcy5
Mycn
1700037H04Rik
Ier5
Srp14
Prl3c1
Cd44
Ubb
Tmem191c
Cyp26a1
Cxcl1
H3c11
H2bc22
H2bc14
H2ac22
H1f5
Abl1
Dennd2c
Brwd1
Gramd1b
Trim7
Oaz2
Vgll2
Slc33a1
Gmps
Gnb5
Adam5
Plbd2
Tfrc
Bcl2a1d
P4ha3
Tm2d2
Adam9
Taf4
Fbxo44
Fbxo2
Nudt4
Kat7
Hspa8
Mylip
H3c15
H3c14
H2ac19
H2ac18
Dpagt1
Prxl2b
Klf2
Capns1
Trpm3
Lag3
H4bc24
H2bc23
H2ac24
H2ac23
Cd209a
Usp25
Ksr1
Ier2
Sub1
Ect2
Cyth4
Rhobtb1
A930033H14Rik
H4c14
H3c13
H2bc18
Mtnr1a
Kcnj16
H4c18
Poldip3
Rnf19b
Ing1
Cars2
Enpp4
Creb3l3
H4f16
H2aj
Cidea
Fam24b
Fam24a
Cuzd1
Crebzf
Ucp2
Hoxb4
Snai1
Ccin
Fndc3b
Malt1
Tmem131l
Mettl14
Xylb
Ei24
Pom121l2
Tcp11
Rnf13
Mreg
Prkdc
Mcm4
Dnah7b
Rcc1
Gm36210
Cic
Trib3
Tal2
Col6a6
Nabp1
Tnfsfm13
Tnfsf12
Baz1b
Slc13a2
Ncor1
Srsf3
Fbxo6
Bcat2
Xpo1
Tll1
Gm20594
Extl1
Galnt2
Mafa
Bmerb1
Ints6
H2bc21
H2ac21
H2ac20
H2bc4
H2ac6
Sertad2
Taar6
Lasp1
Dlg4
Acadvl
Hmbs
H2ax
Pigz
Pmepa1
Gja4
Golga7
Mdga1
Lmbrd1
Gtpbp4
Tacr2
Akap8l
Adgre5
Habp2
Gadd45b
Evi5
Ap3s2
Sgf29
Itga5
Hnrnpab
H4c17
Ttpal
Scn8a
Foxo3
Klf4
Rgs18
Mrps2
1700007K13Rik
Ncmap
Gtf2a1
Nfyb
Unc93a2
Ppp3r1
Hjurp
A730008H23Rik
Plekha7
Gstp2
Gstp1
2510009E07Rik
Fhl1
H1f4
Arrdc2
Creld1
Rab34
Proca1
Nodal
Tctex1d4
Plk3
Btbd19
Eif4b
Nectin2
Phf5a
Aco2
Tmem50a
Syf2
Rsrp1
Ifitm7
Wdtc1
Tmem167b
Xpnpep1
Hsp90aa1
Smc3
Dppa2
Btg2
Cited2
Mphosph9
2810006K23Rik
Fanci
Cnn3
Sumo1
Tmem42
Map10
C1qbp
Asph
Tgm4
Fcgr4
Rab7
Sfi1
Nop58
Nufip2
Grasp
Rrn3
Kng2
Zbtb37
H4c12
H2bc15
H2ac15
Fam53c
Cdc25c
Rpl11
Ccdc92b
Angptl8
Osbpl1a
Jarid2
Tmigd1
Icam1
Smyd2
Hoxb5
Ttf1
Cfap77
Hsd17b14
Tob1
Arid5a
Trim17
H3f4
Rph3al
Nudt1
Eif4enif1
Cotl1
Hspb8
Dusp9
Gm3448
Gm3417
Sp8
Krt15
Krt13
Asgr1
Rab37
Pomgnt2
Npffr2
Stap2
Mpnd
Nfrkb
Abcc12
Ttk
Il17b
Sec22c
Pcx
Slc6a16
Cd37
Cyp11a1
Pus1
Ep400
Acy3
Prdx2
Junb
Caskin1
Zswim8
Chchd1
Taar7a
Porcn
Zdhhc18
Letmd1
Tefm
Kdm3b
Ggact
Ubxn2a
Atad2b
Tcte3
Gm3435
Ubr4
Ranbp3l
Trim41
Hrob
Tpm2
Dcpp1
Hexim1
Mmp11
Gm867
Chchd10
Rab11fip2
Syngr1
Rpl3
Alg14
Calm2
Mettl7a2
Methig1
Higd1c
Map7
Rps11
Bcar1
Ankrd39
Septin1
Onecut3
Zfp827
Gm20806
Ubc
Atp2a2
Mtg2
Coa7
Sde2
Kctd2
Atp5h
Olfr1359
Rnd3
Stra8
Chd9
Senp3
Unc93a
Tmem170
9030025P20Rik
Mybpc3
Dgke
Sirt4
Hrh2
Slc17a7
Rai1
Lrch4
Fbxo24
Pold2
Wdr92
Utp14b
Pno1
Hps5
Gtf2h1
Acsl3
Thap4
Gm3415
Gm3402
4930449I24Rik
Gm17660
Mpp7
Cenpm
Stra6
Smarca5
Car5a
Sh3bp4
Sbp
Dpysl3
4921509C19Rik
Sgk1
Ifna6
Ifna5
1700067K01Rik
Zfp143
Txnip
Slc2a9
Tas2r134
Stk3
Srsf5
Dctn6
Cbx4
Insig1
Sntb2
Rnaset2b
Capn3
Wif1
Csrnp2
Psma6
Dtx4
Dock6
Tube1
Fam229b
Sumf1
Trpm1
Ndufb8
Epha2
Btbd16
Mbd6
Ddit3
Amy2a5
Amy2a4
Amy2a3
Amy2a2
Zdhhc12
Pkn3
Fut8
Atg14
Haus1
Atp5a1
Ppp1r10
Mrps18b
Atat1
2410137M14Rik
Ninj2
Coro1b
Slc9a1
Gm648
Dnajb9
Uck1
Tro
Rnaset2a
Pbld2
Hnrnph3
Ccn4
Npbwr1
Gtf2a1l
Cacng6
Spg20
4921539E11Rik
Prdm14
Dcaf4
Carnmt1
Sema4a
Ss18
Klf6
Hoxa1
Rsc1a1
Zfp36l1
Llgl2
Nsrp1
Acot7
Cfap74
Rnf169
Cphx3
Cphx2
Cphx1
Naglu
Dgat2
Arl15
Acp6
Mro
Ddit4
Calm1
Myrf
Eif2s3y
Rbm14
Gm21992
Eif4h
Mok
Usp4
Pml
Msh6
Gtf2b
Gpx1
Aqp7
Wsb1
Ube2o
Aanat
Vmn2r72
Sacm1l
Msgn1
Ptprf
Hsp90ab1
Appl2
Ctsl
Haus4
Gja1
Lrrc10b
Fbxo31
Cbr3
D230025D16Rik
Rfc5
Fus
Blmh
H2-DMa
Brd2
Adck5
Srgn
Septin11
Actn4
Tbc1d10b
Raf1
Mylpf
Ly75
Selenok
Hbegf
Atp1a1
Ghdc
Zfp791
Olfr646
Gpr152
Cabp4
S1pr2
Zfp532
Pnp
Mrpl58
Poli
Mettl16
Kdm3a
Aplp2
Slc4a9
Phc1
Ptprcap
Gadd45a
Stk35
C1ra
Etnk2
Actb
Slc25a13
Rpl17
BC031181
Kank3
Rnf103
Jpt1
Sec31b
Myo18a
Eif4g2
Ceacam12
Zfp740
Csad
Gapdh
Mrm2
Cdk5rap2
Tbl1xr1
Psmd7
Ctdsp2
Cox7a2l
Thrsp
Mis18bp1
BC005537
Elavl3
Arhgap19
Obi1
Clu
Atp6v0d1
Agrp
Dhx8
Twsg1
Bcl2l11
Trim40
Trim31
Nanog
Trmt1
Nacc1
Men1
Map4k2
Mat2a
Id3
Tubb4b
Stpg3
Slc34a3
Sbk2
Fam166a
Tmed10
Tdrd7
Ermard
Sertad1
Pltp
Prdx1
Errfi1
Nme1
Magel2
Exosc5
Bckdha
Srsf2
Mfsd11
Mettl23
Misp3
Sf3b1
Itga3
Cyfip2
Dusp1
Dag1
Mpdu1
Eif4a1
Nphs1
Kirrel2
Jam2
Zc3h12a
Mib2
Cdh12
Nup50
Fads1
Prdm10
Mknk2
Taok3
Ifna7
Tmem135
Msi1
Tmem230
Tle5
Pcna
P4ha1
Klf10
Hagh
Fahd1
Cds2
Ccdc58
Tmbim1
Shank1
Clec11a
Tmem129
Tacc3
Slbp
Ndufaf3
Impdh2
Dalrd3
Itch
Ms4a4b
Spata33
Slc35b2
Slc18b1
Rps12
Chmp1a
Dhx9
Ccdc102a
4932438A13Rik
Snrnp35
Slc29a1
Rilpl2
Mymx
G0s2
Slc12a7
Lefty1
Zfp979
Snx6
Sepsecs
Dedd
Aven
Adam32
Zswim3
Acot8
Kcnk4
Gpr137
Bad
Ubash3a
Tnfrsf19
Psmb7
Zfp148
Gas1
Btg1
Tnrc18
Hgsnat
Smdt1
Ndufa6
Asb2
Amd2
Amd1
Mypn
Grap
Hnrnpa2b1
Cbx3
Iqcf6
Gtf2f1
Tmem107
Steap4
Nox3
Wiz
Rab7b
Dnaja1
Mrpl37
Cyb5rl