ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441335 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◣ SRX5441335: HeLa

◢ CPSF3: STRING

RABL2B
RABL2A
TSN
ZNF335
MAPKAPK5
DYNC1LI2
SRD5A1
NUP85
CACTIN
VDAC2
REXO1
POLR3F
DZANK1
PSMD12
ICE1
IPO13
OAZ3
MRPL9
RWDD1
NVL
CAPRIN1
NME6
HSPA9
S1PR4
NCLN
MRPS7
MIF4GD
GGA3
POLR2E
GPX4
GOSR2
ZNF576
IRGQ
FAM187A
EFTUD2
CCDC103
SLC35B1
SUCLG1
PSMG2
CEP76
C19orf48
LYRM4
FARS2
UBE2I
UPF2
DCTN1
MRPS5
ACTR10
COX7A2L
VTI1B
PSMD1
TAOK3
SUDS3
COMMD1
CCT4
NNAT
BLCAP
EXOSC5
BCKDHA
VARS1
STAM
RBBP5
CDC73
SEC61B
ALG2
RABGGTB
SART3
ISCU
SKP1
PTGES2
STAM2
HADHB
HADHA
TSNAX
USP1
PI4KB
PES1
ATP5MG
ZRANB2
ZWILCH
SNAPC5
RPL4
PDHX
APIP
TAF9
RAD17
AK6
RPL21
EIF2S3
NDUFA4
FARSB
PDAP1
BUD31
PAK1IP1
C6orf52
SUMF2
RPL17-C18orf32
RPL17
C18orf32
NUP205
PNO1
HDGF
MRPL24
SUPV3L1
SELENOF
HS2ST1
POLG2
DDX5
VPS52
RPS18
B3GALT4
AXDND1
VEZF1
ZC3H10
RPL41
ESYT1
TM9SF1
IPO4
TSSK4
HSPA1B
RPS27A
CLHC1
TMED1
PIN4
SFI1
EIF4ENIF1
GADD45GIP1
NFKBIL1
DDX39B
ATP6V1G2
ATP5F1E
ANAPC7
SMC2
GOLGA5
RPLP0
GCN1
C6orf226
DPH6
NFE2
HNRNPA1
CBX5
C6orf47
BAG6
APOM
RPS23
ATP6AP1L
RPL35A
LMLN
IQCG
MRTO4
EMC1
MYC
RXYLT1
EPN1
BICRA
ANKLE2
EDC4
RIT1
FAM131A
TTC8
SCRIB
ATP6V0C
AMDHD2
COX20
PHF23
GABARAP
DVL2
SECISBP2
CKS2
RPS12
IER3
FLOT1
FAM104A
C17orf80
RBKS
BABAM2
NRAS
H2AZ1
DNAJB14
RPL26
KRBA2
H2BC4
H2AC6
TBCK
AIMP1
PCBP1
OR6B2
NDUFA10
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
AKAP8
EIF4A2
UFM1
TLCD1
RPL23A
RAB34
NEK8
WDR90
ZNF585B
ZNF383
TRIM65
MRPL38
H4C12
H4C11
H2BC15
H2AC15
PAF1
TBK1
MRI1
C19orf53
PRRT2
MAZ
MPDU1
LOC100996842
EIF4A1
CD68
SOX15
DAPK3
TMPPE
GLB1
SF3B3
COG4
BAZ2A
ATP5F1B
RRP36
MEA1
KLHDC3
CNPY2
RNF166
CTU2
DGKZ
ZBTB37
ADK
PROSER1
NHLRC3
AP3M1
GRAMD2A
DUX4
RPS29
LRR1
LAMP1
TMEM132A
TMEM109
TIMM13
PCBD2
RPN1
TM4SF1
DDIT4
SMIM22
ROGDI
ZNF34
RPL8
NANOS1
GTF3C4
DDX31
THAP9
SEC31A
NAT10
H2BC14
H2AC14
XPNPEP3
ST13
DNAJB7
DENR
GET4
MED1
CDK12
H4C3
H1-6
MRPL2
KLC4
CUL7
SYNRG
NAPRT
MROH6
EEF1A1
PIP4P1
OSGEP
APEX1
DNAJC21
GLRX2
RPS11
RPL13A
ECI1
NOLC1
DPH7
PRKAG1
UPF3A
INPP5E
H1-2
H3C3
UBE2M
CHMP2A
CCDC34
NUDT1
MRM2
MAD1L1
ALKBH5
PFDN5
MYG1
FBXO4
SIRT7
PCYT2
MAFG
XRN1
PKD1
AHRR
RHBDL1
RHOT2
GORAB
TUBB
MDC1
SYNGAP1
PHF1
CUTA
ARHGAP11A-SCG5
ARHGAP11A
ATAD3A
VPS28
PAGR1
MVP
POLR2C
SNAPC4
ZGLP1
FDX2
TTC33
RPL7
RDH10
CMTR1
GBA
SPATC1L
POLDIP3
RPL22L1
POLR2J3
RPL37
PRDX2
JUNB
EIF2D
RPS2
RPL3L
RNF151
NDUFB10
STK36
RNF25
SYCE2
PNMA1
MSH4
MRPS18B
ATAT1
MRM1
DHRS11
RAD23A
CALR
NDUFAF3
DALRD3
IMPDH2
ZCWPW1
PPP1R35
MEPCE
SRSF11
LRRC40
C5orf24
FTH1
BEST1
THOC5
MRPS16
DNAJC9
CCDC138
MLX
COASY
WDR24
STUB1
JMJD8
SEC11C
PEAK3
OAZ1
H2BC21
H2AC21
H2AC20
MAPK8IP3
NDST2
NPM3
FGF8
ERCC6L2
UFSP1
ACHE
RPS10-NUDT3
RPS10
CISD3
RCC1
MATR3
PRDX1
BTBD10
NDUFS3
KBTBD4
FAM180B
SLC25A10
MRPL12
DRAP1
C11orf68
ZNF341
UBC
MAP2K2
SLC3A2
SCAMP3
FAM189B
WDR74
HAX1
RPL27A
SELENOH
BTBD18
PTMA
SLC39A1
CRTC2
CREB3L4
EXOSC6
TRAP1
TOPORS
SMIM27
ZMIZ2
ZBED8
ABHD17A
ZNF358
MCOLN1
MAN2C1
PACSIN3
ARFGAP2
CHD2
NUDT16L1
MAT2A
TOM1
VPS50
HEPACAM2
TXNRD2
COMT
PRKAA1
CLUAP1
C16orf90
NAA10
ARHGAP4
RPL3
PGP
MLST8
CASKIN1
BRICD5
H2BC5
H1-4
MRPS34
EME2
NME3
SRF
CUL9
FZR1
DOHH
NDUFS7
GPSM1
CARD9
RBM4
MAML1
FBF1
KLHL11
COX18
ZBTB26
RABGAP1
USP21
UFC1
PPOX
RPS19
RNASEK
C17orf49
BCL6B
H3C13
H2BC18
ZNF251
TUSC2
RASSF1
CDH24
HYAL2
STYXL1
NOP2
DUS1L
TRIP6
SRRT
GTF2H2C_2
GTF2H2
GPAA1
EXOSC4
ASXL1
ARF3
MOV10
BAG2
RCOR3
SPCS1
GLT8D1
GTF2A2
FADD
TNKS1BP1
FLYWCH1
TRMU
SGSM3
ZNF76
OSTC
H4C9
H2BC12
H2AC12
SHC1
PYGO2
PBXIP1
LOC101928120
TCF3
SETD1B
RHOF
TMEM230
PCNA
EIF4H
MDP1
CHMP4A
MRPL40
HIRA
SGK1
PUF60
DERA
TUBA1B
CYP2W1
COX19
MMP24OS
MMP24-AS1-EDEM2
METTL9
DRG2
ACTN4
RICTOR
BNIP3
ZBTB4
SLC35G6
POLR2A
EHMT1
DENND4B
TUBGCP6
HDAC10
RUVBL1
EEFSEC
RGS14
LMAN2
RPL27
IFI35
SLC39A13
NOXO1
SYNGR3
GFER
PMF1-BGLAP
PMF1
HMCES
TRIP13
BRD9
PPP4R3B
RPS15A
TMEM79
SMG5
GNG14
ROPN1L
DHPS
HSD3B7
RCE1
PDCD6
TMSB4X
MXRA7
CHD8
MAF1
CYC1
WDR97
TRABD
VPS4A
SELENOO
CDK16
CXorf38
SLC50A1
EFNA1
ANKFY1
DPM3
DPY19L4
FUT11
CHCHD1
CCDC88A
FBXW9
MBD3
LRRC37A3
MFSD14A
ABCF3
PACS1
EGLN2
PHLDA1
MTRNR2L1
H3C12
H2BC17
H2AC17
RRAS2
ENOSF1
JAG2
ADAT1
MED26
NRIP1
TXLNA
PHF2
GGA2
C7orf25
PROZ
TMED9
B4GALT7
MTF2
PPFIA4
CARD6
DIAPH1
PITPNM2
ECHS1
RARS1
SLC10A5
IMPA1
PSMD5
CIRBP
FAM174C
EFNA2
NECAB3
ACTL10
PTPN6
C12orf57
ATN1
SCARF1
RILP
RAB5B
PMEL
CDK2
PIGS
ALDOC
MTRNR2L8
LRRC24
C8orf82
TMEM267
GDI1
FAM50A
ATP6AP1
STYX
AURKAIP1
GAPDH
USP3
SURF6
WDR73
NMB
GPS2
EIF5A
TIGD3
ID1
SLC35A2
PIM2
H4C2
H3C2
H2AC4
H4C1
H3C1
H1-1
SRRM3
MRPL55
TMEM101
IFI30
ZBTB45
SLC27A5
GAA
ADPRHL1
TUBGCP5
HOXA3
HOXA6
HOXA5
H4C8
USP39
TMEM150A
RNF181
C2orf68
ZNHIT2
TM7SF2
FAU
ROM1
EML3
B3GAT3
MKRN2OS
MKRN2
H4-16
H2AJ
SNAP47
JMJD4
RHOB
PCBP2
TRIM52
H2BC11
H2AC11
MAMDC2
SETD6
SLC26A11
SGSH
CS
TDG
C12orf73
C5orf15
CD79A
ARHGEF1
TSR3
GNPTG
CENPBD1
TRAF7
RAB26
VPS9D1
H3-3A
BCAP29
AGO3
NOTCH2NLA
SMN2
SMN1
NT5C
TOR3A
NPAS4
JRK
TYSND1
COA3
CNTD1
NCBP3
IFITM3
IFITM1
IFITM2
COPRS
SLC5A5
RPL18A
VCP
FANCG
MLLT1
RECQL4
LRRC14
SLC39A7
RXRB
RING1
HSD17B8
MFSD3
SLC27A3
TAF10
RRP8
ILK
TPP1
ARSG
TOMM20
ZNF205
PPP1R37
ZSCAN10
GFAP
WDR83OS
WDR83
MAN2B1
TELO2
PTX4
ID3
CYB561D1
ATXN7L2
TEDC2
EFNA4
ZNF131
SLC39A4
CPSF1
TEKT2
ADPRS
ZSWIM8
TMEM43
CHCHD4
ATXN2
INKA2
DDX20
TBC1D17
PNKP
AKT1S1
CTNNAL1
SPHK2
SPACA4
RPL18
FAM83E
NOL7
CIAO3
SLC24A1
INTS14
CYBA
GPANK1
CSNK2B
NUDT15
UBA2
ATAD2
SLC39A3
ZNF207
C17orf75
TATDN3
NSL1
TSFM
FAM222B
HAGHL
CCDC78
ANTKMT
METRN
RPL19
CACNB1
RPL12
LRSAM1
MIEN1
GRB7
WDR11
LRRC8D
NDUFA4L2
H4C5
H3C4
H2BC7
H2AC7
H4C4
GTF2H2C
TSC1
GFI1B
BUD13
PEX12
AP2B1
CYTH1
TOB1
VWA7
NSFL1C
NOTCH2NLB
RSAD1
CHAD
WDR46
RGL2
PFDN6
INPP5K
FBXL20
SNRPE
RUFY2
STPG3
NELFB
FAM166A
UBA52
TCF25
PAM16
ZNF35
SLC12A6
NUTM1
NOP10
VIM
NFYB
PDCD2L
TMCO1
PPP1R15B
C7orf26
UCKL1
ELL
PSMC3IP
COPB1
TBCD
TAF9B
ITGB3BP
EFCAB7
CLK3
ZNF451
MRPS28
ABCA7
MTARC1
BICD2
BAX
KMT5B
SAMD1
C19orf67
CDK11A
SPOUT1
RNASEH2C
KAT5
C16orf71
ANKS3
SF3A3
TIPIN
ZBTB22
TAPBP
DAXX
STX16
ARMC7
MTHFS
UBE2Z
TCHP
ERCC5
STX10
IER2
BRWD1
PSMG1
TMEM107
VMAC
NDUFA11
ATP7A
PIP4K2B
STRIP1
SP2
PTCD1
CPSF4
ANKRD12
SSBP1
OTULIN
NPB
MTREX
DHX29
NFAT5
TEX38
ATPAF1
MBTPS1
C8orf33
CCDC97
CNP
WASHC2C
ADI1
ARL6IP1
ZNF346
UHRF2
CHD5
GTF2IRD2B
GAS2L1
HASPIN
TAF2
NR1H3
ACP2
SKA3
MRPL57
LENG9
CDC42EP5
WDR37
IDI1
CHUK
TMEM222
MRPL58
CLN6
MTA2
TUT1
FLOT2
DHRS13
NUF2
LSG1
WDR27
C6orf120
SFXN4
AXL
BHLHE40
FAM228B
TP53I3
SF3B6
FECH
ANKRD40
C16orf46
CLPTM1L
KIFBP
PLK1
ABTB1
TMEM223
TMEM179B
CSRNP2
POLD1
NR1H2
RHBDF1
MPG
GTSE1
CDK5R1
CEP72
SCAMP5
TMED4
DDX56
NKIRAS1
DCAF10
TRMT2A
RANBP1
CCDC24
QRICH1
RPL15
CCDC43
H3C8
H2BC10
DNAJA3
CORO7-PAM16
CORO7
RPS5
TFAP2A
SLC25A42
TAOK2
ROMO1
NFS1
CHMP6
SEC62
PRSS27
SLC25A17
ALDOA
STAT3
WDR70
NUP155
PBLD
HNRNPH3