If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets.
The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions).
In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |
|---|---|---|---|---|---|---|
| National Institute of Industrial Science and Technology (AIST), Tokyo Waterfront open_in_new | Tamotsu Noguchi | Protein Structure | - |
This database has the positional information in the amino acid motif structure. The information is identified by experiments or sequence analysis.
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CC BY-SA Detail |
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| Research Center for Genetic Information, Medical Institute of Bioregulation, Kyushu Universityopen_in_new | Kenshi Hayashi | Polymorphism | human |
SNP discovery and determination of their allele frequency in various sample groups using pooled DNA-quantitative fluorescent SSCP analysis
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CC BY-SA Detail |
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| National Institute of Industrial Science and Technology (AIST), Tokyo Waterfront open_in_new | Michael Gromiha | Protein Structure | - |
TMFunction is a database of functional residues in alpha-helical and beta-barrel membrane proteins.
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CC BY-SA Detail |
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| Graduate School of Information Science Nagoya Universityopen_in_new | Amemiya Takayuki | Protein Structure | - |
This database is to represent the relationship between protein structural change and ligand binding.
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CC BY-SA Detail |
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| National Institute of Industrial Science and Technology (AIST), Tokyo Waterfrontopen_in_new | Tamotsu Noguchi | Protein structure, Small molecules, Nucleic acid structure | - |
This database extracts this dynamic information from the protein structure being obtained now.
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CC BY-SA Detail |
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| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |