If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets.
The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions).
In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |
|---|---|---|---|---|---|---|
| The Institute of Medical Science, The University of Tokyoopen_in_new | Toshihisa Takagi | Metabolic and Signaling Pathways | Model species (Homo sapiens, Mus musculus, Rattus norvegicus) etc. |
The database is a highly structured, manually curated database of signal transduction pathways. |
CC BY-SA Detail |
|
| Kazusa DNA Research Institute open_in_new | Satoshi Tabata | Plant Genome | Plant, Algae, Green algae |
The database of general information, DNA markers, QTLs, DB links and genome analysis methods of plants including model plants. |
CC BY-SA Detail |
|
| National Institute of Industrial Science and Technology (AIST), Tokyo Waterfront open_in_new | Suwa Makiko | Protein Sequence | Bacteria, Archaea, Eukaryota |
The database in which protein coding regions in genomes are assigned to three-dimensional structures.
|
CC BY-SA Detail |
|
| National Institute of Industrial Science and Technology (AIST), Tokyo Waterfront open_in_new | Wataru Nemoto | Protein Structure | human |
The database provides information about GPCR oligomerization.
|
CC BY-SA Detail |
|
| National Institute of Technologyopen_in_new | Ken Kurokawa | Genome Information | Archaea, Bacteria, Fungi |
The database is integrating various microbiological knowledge centered on genome information. |
CC BY-SA Detail |
|
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |