INOH
About This Database
Database Description
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Database name
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INOH
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Alternative name
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Integrating Network Objects with Hierarchies | |||||||||
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DOI
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10.18908/lsdba.nbdc00107-000.V003 |
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Version
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Creator
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Creator Name
Toshihisa Takagi*  
Creator Affiliation
School of Science, The University of Tokyo
Literature Search
Creator Name
Ken-ichiro Fukuda
Creator Affiliation
Information and Communication Infrastructure Division, National Institute of Advanced Industrial Science and Technology
Creator Name
Satoko Yamamoto
Creator Affiliation
Institute for Bioinformatics Research and Development, Japan Science and Technology Agency
Creator Name
Noriko Sakai
Creator Affiliation
Institute for Bioinformatics Research and Development, Japan Science and Technology Agency
Creator Name
Hiromi Nakamura
Creator Affiliation
Information and Mathematical Science and Bioinformatics Co., Ltd.
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Contact address
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https://form2.jst.go.jp/s/contact_nbdc | |||||||||
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Database classification
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Metabolic and Signaling Pathways - Metabolic pathways
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Database description
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INOH database is a highly structured, manually curated database of signal transduction pathways. The database focuses on curating and encoding textual knowledge in scientific articles into a machine-processable form. |
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Features and manner of utilization of database
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INOH database provides signal transduction pathway data which is well-annotated by the INOH ontology terms.
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License
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CC BY-SA Detail | |||||||||
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Background and funding
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Name
Institute for Bioinformatics Research and Development, Japan Science and Technology Agency |
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Reference(s)
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Article title
Higher Order Knowledge Proceeding : Pathway Database and Ontologies.
Author name(s)
Fukuda, K.
Journal
Genomics & Informatics, vol.3, No.2, ISSN 1598-866X, 2005.6, pp.47-51
Article title
INOH: ontology-based highly structured database of signal transduction pathways.
Author name(s)
Yamamoto S, Sakai N, Nakamura H, Fukagawa H, Fukuda K, Takagi T.
Journal
Database (Oxford). 2011 Nov 26;2011:bar052. Print 2011.
External Links
Article title
INOH pathway database: Curation, Annotation, Integration.
Author name(s)
Fukuda K.
Journal
InterOntology08, 1(1), pp.47-50 (2008).
Article title
Graphical Syntax and Query for Pathway Database
Author name(s)
Fukuda, K., Yamamoto, S., Sakai, N., Nakanishi, Y., Nakamura, H., Takagi, T.
Journal
The 10th World Multi-Conference on Systemics, Cybernetics and Infrmatics, pp7-10 (2006).
External Links
Article title
Event ontology: a pathway-centric ontology for biological processes.
Author name(s)
Kushida T, Takagi T, Fukuda K.
Journal
Pac Symp Biocomput. 2006:152-63.
External Links
Article title
Research on biological pathways peculiar to woody perennial Plants using a pathway database : P-INOH.
Author name(s)
Kushida, T., Yamamoto, S., Yamagata, Y., Asanuma, T., Hattori, E., Takagi, T. and Fukuda, K.
Journal
Proceedings of International Workshop on Knowledge Discovery and Data Management in Biomedical Science. 2005.5, pp.56-67
Article title
The Molecule Role Ontology: An Ontology for Annotation of Signal Transduction Pathway Molecules in the Scientific Literature.
Author name(s)
Yamamoto S, Asanuma T, Takagi T, Fukuda K.
Journal
Comp Funct Genomics. 2004;5(6-7):528-36.
External Links
Article title
A Pathway Editor for Literature-based Knowledge Curation.
Author name(s)
Ken-ichiro Fukuda, Toshihisa Takagi.
Journal
APBC 2004, pp.339-344.
Article title
Pathway Database: Higher Order Knowledge in Biology.
Author name(s)
Ken-ichiro Fukuda, Yuki Yamagata, Toshihisa Takagi.
Journal
nformation Processing Society of Japan (IPSJ), Transactions on Databases, vol.45 No.SIG7(TOD 22) June 2004, pp.77-84
External Links
Article title
FREX: a query interface for biological processes with hierarchical and recursive structures.
Author name(s)
Fukuda K, Yamagata Y, Takagi T.
Journal
In Silico Biol. 2004;4(1):63-79. Epub 2004 Feb 22.
External Links
Article title
Knowledge representation of signal transduction pathways.
Author name(s)
Fukuda K, Takagi T.
Journal
Bioinformatics. 2001 Sep;17(9):829-37.
External Links
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| Original website information | ||||||||||
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Database maintenance site
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The Institute of Medical Science, The University of Tokyo |
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URL of the original website
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(Closed) http://inoh.hgc.jp/ | |||||||||
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Operation start date
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2006/02/01 | |||||||||
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Last update date
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2011/03/29 | |||||||||
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URL of the portal site
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- | |||||||||
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Whole data download
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(Closed) http://inoh.hgc.jp/download.html | |||||||||
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Referenced database
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Entry list
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Not available | |||||||||
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Query search
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Not available | |||||||||
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Web services
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Not available | |||||||||
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URL of Web services
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(Closed) http://inoh.hgc.jp/inoh_api_manual.html | |||||||||
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Need for user registration
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Not available | |||||||||