If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets.
The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions).
In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |
|---|---|---|---|---|---|---|
| Japan Science and Technology Agency open_in_new | - | Chemical substance | - |
RDF data of Japan Chemical Substance Dictionary (Nikkaji) described by standard ontologies. |
CC BY Detail |
|
| Graduate School of Integrated Sciences for Life, Hiroshima University | Hidemasa Bono | RNA data | - |
16S RNA sequence set for metagenomic analysis using kraken2. |
CC BY Detail |
|
| jPost team | Yasushi Ishihama | Proteomics | - |
jPOSTdb is a database containing re-analysis results with unified criteria for proteome data from jPOST repository. |
CC0 Detail |
|
| Technology Research Association for Next generation natural products chemistryopen_in_new | Yoshifumi Fukunishi | - | - |
The 'ready-to-dock' database of small chemical compounds, for virtual drug screening on computer docking studies. |
CC BY-SA Detail |
|
| Center for Marine Environmental Studies, Ehime Universityopen_in_new | Kei Nakayama | Monitoring of chemical substances | - |
ChemTHEATRE is the database that stores monitoring data on all chemical substances. |
CC BY-SA Detail |
|
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |