If a database is inadequate in terms of its description, unclear with respect to the terms of use, or is not downloadable, it may not be fully used, cited or rightly acknowledged by the (research) communities. This is even true for databases with high-quality datasets.
The Life Science Database Archive maintains and stores the datasets generated by life scientists in Japan in a long-term and stable state as national public goods. The Archive makes it easier for many people to search datasets by metadata (description of datasets) in a unified format, and to access and download the datasets with clear terms of use (see here for detailed descriptions).
In addition, the Archive provides datasets in forms friendly to different types of users in public and private institutions, and thereby supports further contribution of each research to life science.
| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |
|---|---|---|---|---|---|---|
| Laboratory for Molecular Developmental Biology Department of Biophysics, Division of Biological Sciences, Graduate School of Science, Kyoto University open_in_new | Kiyokazu Agata | Expression, Localization | planaria |
The database for planarian nervous system analysis, including results of the gene expression profiling of single cells, the gene expression analysis by whole-mount in situ hybridization and the analysis by Immunohistochemical staining.
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CC BY-SA Detail |
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| Kyoto Institute of Technologyopen_in_new | Shigeo Hayashi | Expression | fruit fly |
The database compiles insertion points of Gal4 enhancer trap and patterns of enhancer activity in fruit fly.
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CC BY-SA Detail |
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| Tokyo Metropolitan Universityopen_in_new | Takeshi Kanegae | cDNA | fern |
The database of Adiantum capillus-veneris EST clones and annotations of them.
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CC BY-SA Detail |
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| University of Tsukubaopen_in_new | Hideko Urushihara | cDNA | cellular slime mold |
The database of Dictyostelium discoideum cDNA sequences and annotations (results of blast search, motif search, prediction of product localization, expression profile, alignment to the genome, and so on)
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CC BY-SA Detail |
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| The University of Tokyoopen_in_new | Naoki Sato | Protein sequences | 95 species |
The database of protein sequence clusters in 95 species. They are obtained from the comparison of all-against-all blast search results.
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CC BY-SA Detail |
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| Database name⇅ | Maintenance site⇅ | Principal creator⇅ | Database classification⇅ | Organism⇅ | Summary⇅ | License⇅ |