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Database name ⇅	DOI ⇅	Database classification ⇅	Organism ⇅	Database description ⇅	Features and manner of utilization of database ⇅	Database maintenance site ⇅	License ⇅
RGP gmap (RGP : RICE GENETIC MAP IN NATURE GENETICS)	10.18908/lsdba.nbdc00318-01-000	Plant databases - Rice Sequence, Gene Expression	Oryza sativa (4530)	RICE GENETIC MAP IN NATURE GENETICS is a database of 1381 DNA markers that were used to create the rice genetic map. The rice genetic map is published in the Nature Genetics volume 8, 365-372, December 1994.	The rice genetic map consists of 1381 RFLP markers (1993 version) mapped on a Nipponbare (japonica) and a Kasalath (indica) F2 intercross. Because this archive has been created based on the following data of the last update date, it may not match the data in the current situation.	National Institute of Agrobiological Sciences	CC BY-SA
KAIKOcDNA	10.18908/lsdba.nbdc00951-000	Nucleotide Sequence Databases	Bombyx mori (7091)	KAIKOcDNA is a database of cDNA (EST) information accumulated by the Silkworm Genome Research Program (SGP).	KAIKOcDNA database provides the sets of silkworm partial cDNA sequences with a simple annotation, which submitted to public database such as DDBJ. It allows users to search cDNAs by various methods, e.g. accession number, clone name, BLAST search score, GO (Gene Ontology) term and keywords. Clustering information and annotation of the EST can be referenced from the search results. The characteristic information of the cDNA libraries those are species of silkworm, organ / tissue, and developmental stage, etc., is described in "cDNA libraries".	National Institute of Agrobiological Sciences	CC BY-SA
PLACE (A Database of Plant Cis-acting Regulatory DNA Elements)	10.18908/lsdba.nbdc00168-000	Plant databases	Tracheophyta (58023)	PLACE is a database of motifs found in plant cis-acting regulatory DNA elements based on previously published reports on vascular plants including the variations that have been identified in these motifs in other genes or in other plant species in later publications. The database also contains brief descriptions of individual motifs, literatures with PubMed links, and the corresponding accession numbers in the DDBJ/EMBL/GenBank.	Background and objectives A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements (cis-elements) with tools for homology searches will be helpful in estimating the mode of gene regulation, regions involved in such regulation, and other pertinent regions in the DNA sequence. In order to provide a compilation of all reported cis-elements of higher plants, we constructed the PLACE database. Features and manner The cis-elements in this database including motif sequences, descriptions of major features, and references have been compiled by extensive survey of original literatures. Review articles on the regulatory regions of some plant genes were also used to obtain information on specific groups of motifs. The documents of individual motifs can be accessed by keyword search using a browser. The query sequence is searched by the Signal Scan program. The search can be initiated by copy and paste of the query sequence and the results are shown in a few seconds. The Signal Scan output is shown in one of three options: a list of motifs in alphabetical order, a sequence map, and a list of motifs beginning at the 5' end of the query sequence. The document contains information on the PubMed ID and the GenBank accession number with corresponding links. Usefulness Experimental evidence for each motif is described in the ‘Reference Criteria’ (RC) field. Users of this database must be aware that the motifs compiled here were not strictly examined on this premise. Therefore users are advised to refer to the original reports of individual motifs before using any of the results obtained for publication.	National Institute of Agrobiological Sciences	CC BY-SA
GenLibi (Gene Linker to bibliography)	10.18908/lsdba.nbdc01093-000	Human Genes and Diseases	Homo sapiens (9606) Mus musculus (10090) Rattus norvegicus (10116)	GenLibi (Gene Linker to bibliography) provides information on genes and their related diseases and phenotypes that were obtained from the JST bibliographic information JDream II.	Users can get bibliographic information by searching with the name of the diseases and the phenotypes. The original site automatically integrated information from EntrezGene, RefSeq, HGNC, KEGG PATHWAY, Reactome, KEGG SSDB and JDream II, and provided together information on genes, proteins, polymorphisms, pathways, phenotypes and ortholog/protein sequences related to human, mouse and rat genes.	Japan Science and Technology Agency	CC BY-SA
The Rice Growth Monitoring for the Phenotypic Functional Analysis	10.18908/lsdba.nbdc00945-000	Plant databases - Rice	Oryza sativa (4530)	Database of phenotype analysis of rice by the system capable of imaging growth from germination to flowering.	Phenotypes of mutants and recombinants are examined and recorded for all life cycles.	National Institute of Agrobiological Sciences	CC BY-SA
Database name	DOI	Database classification	Organism	Database description	Features and manner of utilization of database	Database maintenance site	License