Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Pathological items | Open TG-GATEs | 10.18908/lsdba.nbdc00954-01-012 |
The list of pathological findings obtained from in vivo tests. |
We prepared hematoxylin-eosin-stained specimen slides and then performed histopathological examination by optical microscopy. |
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Data detail
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| Pathological Image Information | Open TG-GATEs Pathological Image Database | 10.18908/lsdba.nbdc00954-02-001 |
Information regarding each high-resolution digital image in the "Pathological Images (SVS format)" section. |
Information entered into the digital slide scanner while scanning the slides. |
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Data detail
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| Pathological Images (SVS format) | Open TG-GATEs Pathological Image Database | 10.18908/lsdba.nbdc00954-02-002 |
High-resolution whole slide digital images of liver and kidney pathological specimens stained with hematoxylin-eosin dyes. The specimens were obtained through animal tests. |
Digital images of glass slides were scanned by using digital slide scanner (Aperio's ScanScope AT). |
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| Cluster (Cyanobacteria) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-005.V002 |
Clusters of amino acid sequences of Cyanobacteria (blue-green algae) obtained from the NCBI Reference Sequence Database. Along a phylogenetic tree, clusters were generated in Cyanobacteria taxon and in each sub-taxon of Cyanobacteria by using the results of all-against-all BLAST searches among the amino acid sequences. An amino acid sequence belongs to only one cluster in a taxon. |
Data in "Protein (Cyanobacteria)" was used. |
Along a phylogenetic tree obtained from the NCBI Taxonomy Database, clusters in lower taxa (subclusters) were recursively aggregated to form clusters in a taxon (superclusters). |
Data detail
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| Cluster (Viridiplantae) | PGDBj - Ortholog DB | 10.18908/lsdba.nbdc01194-02-002.V002 |
Clusters of amino acid sequences of Viridiplantae (green plants) obtained from the NCBI Reference Sequence Database. Along a phylogenetic tree, clusters were generated in Viridiplantae taxon and in each sub-taxon of Viridiplantae by using the results of all-against-all BLAST searches among the amino acid sequences. An amino acid sequence belongs to only one cluster in a taxon. |
Data in "Protein (Viridiplantae)" was used. |
Along a phylogenetic tree obtained from the NCBI Taxonomy Database, clusters in lower taxa (subclusters) were recursively aggregated to form clusters in a taxon (superclusters). |
Data detail
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |