| 項目名 | 項目の説明 |
|---|---|
| dna update |
Last update of homology search against DNA sequences in public database |
| IDs and Links |
- |
| Library |
14 different sequenced cDNA libraries (AF, AH, CF, CH, FC, FC-IC, FCL, SF, SH, SL, SS, VF, VH and VS) derived from five developmental stages. |
| Clone ID |
ID of cDNA clone |
| Atlas ID |
ID of Atlas database (http://dictycdb.biol.tsukuba.ac.jp/~tools/bin/ISH/index.html) and link to Atlas database |
| dictyBase ID |
ID of Protein Coding Gene in dictyBase (http://dictybase.org/). The link to dictyBase is provided in the TogoDB edition. |
| Link to Contig |
Link to contig containing EST (TogoDB edition only) |
| Representative Seq. and Annotation |
- |
| Representative DNA sequence |
Representative DNA sequence |
| sequence update |
Last update of representative DNA sequence |
| Translated Amino Acid sequence |
Amino acid sequence translated from representative DNA sequence |
| Translated Amino Acid sequence (All Frames) |
Amino acid sequences resulting from translation in all six reading frames of DNA sequence |
| Homology vs CSM-cDNA |
List of top 10 hits in blastn search against the clone sequence in dicty_cDB |
| own update |
Last update of homology search against CSM (a set of clone sequences) |
| Homology vs DNA |
List of top 10 hits in blastn search against DNA sequences in public database |
| Homology vs Protein |
List of top 10 hits in blastx search against protein sequences in public database |
| protein update |
Last update of homology search against protein sequences in public database |
| PSORT |
The results of PSORT (http://psort.ims.u-tokyo.ac.jp/), which is a program to predict the subcellular localization of proteins. |
| Seqeunces |
- |
| 5' end seq. ID |
ID of 5' EST sequence. "F" is added to the end of ID. |
| 5' end seq. |
5' EST sequence. FASTA format. |
| Length of 5' end seq. |
Length of 5' EST sequence. |
| 3' end seq. ID |
ID of 3' EST sequence. "Z" is added to the end of ID. |
| 3' end seq. |
3' EST sequence. FASTA format. |
| Length of 3' end seq. |
Length of 3' EST sequence. |
| Connected seq. ID |
ID of 5' EST-3' EST-ligated sequence. "P" is added to the end of ID. |
| Connected seq. |
Sequence of 5' EST ligated to 3' EST by 10 gaps (-). |
| Length of connected seq. |
ID of 5' EST-3' EST-ligated sequence. (Gap (-) are not counted.) |
| Full length Seq ID |
ID of full-length cDNA. "E" is added to the end of ID. |
| Full length Seq. |
Full-length cDNA sequence. FASTA format. |
| Length of full length seq. |
Length of full-length cDNA. |
| NBRP ID |
ID of cDNA clone covering full-length ORF provided by the National BioResource Project (http://www.nbrp.jp/). The link to the "National BioResource Project (NBRP) Dictyostelium discoideum" gene database (http://nenkin.lab.nig.ac.jp/genes?locale=en) is provided in the TogoDB edition. |
| Representative seq. ID |
ID of DNA sequence used in homology search. Among these sequences, one sequence is selected as the representative DNA sequence by prioritizing 1) full-length cDNA sequence, 2) 5' EST-3'EST-ligated sequence, 3) 5' EST sequence and 4) 3' EST sequence in this order. |