| 項目名 | 項目の説明 |
|---|---|
| Bait ORF |
The ORF name of Bait, and the systematic name in the SGD (Saccharomyces Genome Database;http://www.yeastgenome.org/). |
| Bait gene name |
The gene name of Bait, and the standard name in the SGD. |
| Bait description |
The annotation of Bait, and description in the SGD. |
| Rows with this bait as bait |
The number of rows (interactions) having this Bait ORF as the Bait ORF, and the link to the search results (for TogoDB only). |
| Prey gene name |
The gene name of Prey, and the standard name in the SGD. |
| Prey description |
The annotation of Prey, and description in the SGD. |
| Rows with this prey as prey |
The number of rows (interactions) having this Prey ORF as the Prey ORF, and the link to the search results (for TogoDB only). |
| Rows with this prey as bait |
The number of rows (interactions) having this Prey ORF as the Bait ORF, and the link to the search results (for TogoDB only). |
| Literature on bait(YPD) |
The number of articles concerning Bait, obtained from YPD (Yeast Proteome Database)(*2). |
| Literature on prey(YPD) |
The number of articles concerning Prey, obtained from YPD. |
| Literature shared by bait and prey |
The number of articles common to Bait and Prey, as calculated on the basis of the number of articles obtained from the YPD. |
| CuraGen(0 or 1) |
Investigation by CuraGen (0 or 1), obtained from Uetz et al.(*3) |
| S. Fields(0 or 1) |
Investigation by S. Fields (0 or 1), obtained from Uetz et al. |
| Association(0 or 1,YPD) |
Association (0 or 1), obtained from the YPD. |
| Complex (0 or 1,YPD) |
Formation of complex (0 or 1), obtained from the YPD. |
| Synthetic lethality(0 or 1,YPD) |
Synthetic lethality (0 or 1), obtained from the YPD. |
| Co-induced by(YPD) |
Factor that induces expression of both genes, obtained from the YPD. |
| Co-repressed by(YPD) |
Factor that suppresses expression of both genes, obtained from the YPD. |
| Not affected by(YPD) |
Factor that does not affect expression of these genes, obtained from the YPD. |
| Interologs |
The number of interactions that exist between the interacting protein and the ortholog of other species, obtained from the Database of Interacting Proteins(*4). |
| Expression similarity (BRITE) |
Expression data obtained from KEGG BRITE(*5). (High values only, 0.9 or greater) |
| Alternative path with 1 intervening protein |
The number of paths other than this interaction mediated by one intermediate protein, calculated from the full data. |
| Alternative path with 2 intervening proteins |
The number of paths other than this interaction mediated by two intermediate proteins, calculated from the full data. |
| IST hit |
Number of hits of Interaction Sequence Tags (IST) (The number of detected interactions and the indicator of reproducibility) |
| IST hit in the opposite bait/prey orientation |
The IST hit number for a combination in which Bait and Prey are in the reverse direction. |
| Rows with this bait as prey |
The number of rows (interactions) having this Bait ORF as the Prey ORF, and the link to the search results (for TogoDB only). |
| Prey ORF |
The ORF name of Prey, and the systematic name in the SGD (Saccharomyces Genome Database;http://www.yeastgenome.org). |
| Literature sharing score |
The score concerning co-occurrence of Prey and Bait in the literature, calculated by the calculation formula.Calculation formula for the score: |