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Data name Database name DOI Description of data contents Data file Simple search URL Data acquisition method Data analysis method Number of data entries Data detail
(reprocessed) Enhancers FANTOM5 10.18908/lsdba.nbdc01389-017.V003

Identified enhancers of human and mouse by RNA transcription mesurement with CAGE. They are reprocessed with new reference genome sequences (hg38/mm10).

(reprocessed) enhancer (Homo sapiens)
(101MB)
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CAGE

Human: 5files / Mouse: 4files
Data detail open_in_full
(reprocessed)CAGE peaks FANTOM5 10.18908/lsdba.nbdc01389-009.V003

Data about CAGE peak regions and RNA transcriptional initiation activities measured by CAGE. Human and mouse reads are re-mapped to new reference genome sequences (hg38/mm10).

(reprocessed)CAGE_peaks (Homo sapiens)
(11 MB)
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CAGE
DPI (Decomposition-based peak identification)

Human: 8 files / Mouse: 8 files
Data detail open_in_full
(reprocessed)CAGE_peaks_annotation FANTOM5 10.18908/lsdba.nbdc01389-011.V003

Annotation of human and mouse CAGE peaks and RNA transcriptional initiation activities by CAGE
Human and mouse reads are re-mapped for new reference sequences (hg38/mm10).

(reprocessed)CAGE_peaks_annotation (Homo sapiens)
(19 MB)
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CAGE

Human: 4 files / Mouse: 4 files
Data detail open_in_full
(reprocessed)CAGE_peaks_expression FANTOM5 10.18908/lsdba.nbdc01389-011.V003

Annotation of human and mouse CAGE peaks and RNA transcriptional initiation activities by CAGE
Human and mouse reads are re-mapped for new reference sequences (hg38/mm10).

(reprocessed)CAGE_peaks_annotation (Homo sapiens)
(16 MB)
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CAGE

Human: 7 files / Mouse: 7 files
Data detail open_in_full
(reprocessed)DPI_clustering FANTOM5 10.18908/lsdba.nbdc01389-018.V003

This is the peak identification of human and mouse reprocessed mapping data with DPI (Decomposition-based peak identification) method. (BED format)

*.tc.bed.gz:
CAGE tag clusters with original definition
*.tc.decompose_smoothing_merged.bed.gz:
All peaks with DPI
*.tc.decompose_smoothing_merged.ctssMaxCounts3.bed.gz:
All extracted peaks
*.tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.bed.gz:
Probable extracted peaks

(reprocessed)DPI_clustering (Homo sapiens)
(150MB)
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Human: 4 files / Mouse: 4 files
Data detail open_in_full
Data name Database name DOI Description of data contents Data file Simple search URL Data acquisition method Data analysis method Number of data entries Data detail