ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3301664 | Embryonic limb
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◣ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Cldn34d
Plekhb1
Zfp442
Eva1b
Ndufs7
Kctd1
Caap1
Tmem125
Klhdc8b
Ccdc71
Foxp1
Pigt
Nek2
Rusc1
Ndufs8
Atxn2
Rarb
Foxp2
Mrpl16
Pidd1
Slc25a22
Tmem259
Cnn2
Slc35d1
Pitpnc1
Bmt2
Fbxo8
Cep44
Rbks
Babam2
Cfl2
Ndufs1
Eef1b2
Rdm1
Stard3
Tbc1d17
Akt1s1
Pdcl3
Arf4
Homer3
Ciao2b
Hoxb3
Cox17
Maats1
Hoxa6
Hoxa5
Rps3a1
Iffo1
Zfp937
Pspn
Alkbh7
Oxnad1
Dph3
Speer4e
Rarg
Sdha
Ccdc127
Knop1
Iqck
Spon2
Tex14
Rax
Gm10130
Lsm8
Spata33
Chmp1a
Guf1
Lipe
Usp37
Cnot9
Pdlim7
Supt16
Wdr77
Atp5pb
Gm4981
Ccne1
Zfp770
Mdh1b
Fastkd2
Dnajc19
Tradd
Hsf4
Fbxl8
Pick1
Eapp
Capg
Fam32a
Wdfy1
Mpv17l2
Yars
S100pbp
Zfp827
Naa35
3300002I08Rik
Idh3b
Nkx1-1
Kansl2
Cuedc1
Taf12
Gcn1
Wdr7
Gpi1
Crb2
Atg9b
Abcb8
Stk11
Rsbn1l
Dock1
Nynrin
Dnajc27
Cpa1
Hspa5
Mbd2
Borcs6
Dpp9
Cox5b
Cyp46a1
Irf2bpl
Tsc22d1
Ptpmt1
Agtpbp1
Hdhd3
Tmem200b
Gpx4
Ppdpf
Gabbr1
Unc50
Coa5
Fabp5
Zmiz1
Mrps33
Gm51573
Anxa5
1810062G17Rik
Ssr1
Zfp532
Cercam
Arih2
Cdkn2aip
Pfn1
Eno3
Armc7
Tmem82
Olfr806
Abhd6
Wwox
Kpna1
Tent5c
Csf2ra
Il31ra
Vmn2r102
Slc15a1
H4c8
H2ac10
Sbno2
Fbxw7
Akirin2
Sspn
Calr
Gcgr
Esr1
Adgra2
H4c3
H1f6
Gabarapl2
Kcnk5
Efnb3
Tmem33
Fam227b
Dtwd1
H3c7
Hivep3
Aqp3
Ints3
H4c2
Tmem181a
Trim29
Hmox2
Socs3
Nemf
Znfx1
Rps29
Fubp3
Tomm5
H3c6
Mtf2
H4c4
H2bc6
Olfr180
H3c2
H3f3b
Cdx1
Prdx6
BC107364
Rasip1
Hoxb13
Slc35g3
Polr2a
Taf13
Ilf2
Bcl2a1a
Mkrn1
Izumo1
H2bc9
Bcl2a1b
Abl1
H4c1
Ifna13
Mycn
Notch4
Cdk15
H3c3
H2bc3
Tmem191c
Tfrc
Ier5
H3c8
H3c11
H2bc22
H2ac22
H1f5
Adam5
Cyp26a1
Abr
P4ha3
Taf4
Bcl2a1d
H4c11
H3c15
H3c14
H2ac19
H2ac18
Klf2
H4bc24
H2bc23
H2ac24
H2ac23
Dchs2
Kat7
Cyth4
Ier2
Vgll2
Xylb
Sub1
Clcn4
H4c18
Capns1
Brwd1
Gnb5
Oasl1
Ing1
Ksr1
Jund
Iqcn
Rnf19b
Ect2
Trib3
H4f16
H2aj
Aadacl2fm1
Enpp4
H2ac4
Poldip3
Mettl14
Malt1
Prkdc
Fam24b
Cidea
Rhobtb1
Nabp1
A930033H14Rik
Rnf13
H4c9
H2bc11
H2ac11
Tcp11
Gm20594
Cd44
Ap3s2
Mreg
Srsf3
H2bc21
H2ac21
H2ac20
Tmigd1
H3c13
H2bc18
Baz1b
Mafa
H2bc4
H2ac6
H3c1
H1f1
Slc43a1
Dlg4
H2ax
Gja4
Cic
H4c17
Galnt2
H4c6
Gtpbp4
Ttpal
H2bc12
H2ac12
Evi5
H1f2
Adgre5
Foxo3
Sgf29
Itga5
Gtf2a1
Nudt4
Gstp2
Ccin
Nfyb
Arrdc2
Pmepa1
H1f4
Rgs18
Ncmap
Klf4
Hnrnpab
Fam53c
Plk3
Rsrp1
Phf5a
Aco2
H3c10
H2bc14
H2bc13
H2ac13
Dppa2
Nodal
Btg2
Smc3
Ubb
Sumo1
Mphosph9
2810006K23Rik
Tm7sf3
Lrch4
Fbxo24
Asph
Hspa8
H3c4
H2bc8
H2bc7
H2ac8
H2ac7
Rrn3
Scn8a
Zbtb37
H4c12
H2bc15
H2ac15
Creb3l3
Tob1
Sfi1
Ifitm7
Bmerb1
Ints6
Gm3448
Gm3417
Cited2
Hspb8
Icam1
Fbxo6
C1qbp
Cbr3
Dusp9
Ttk
Junb
Ranbp3l
Gm3435
Pcx
Ggact
Porcn
Slc6a16
Cd37
Zdhhc18
Acsl4
Yars2
Kng2
Calm2
Hexim1
Jarid2
Rpl3
Stk3
Tpm2
Ttf1
Rab7
Ankrd39
Taar7a
Atp2a2
Olfr646
Stap2
Mpnd
Arl15
Gm867
Chchd10
Sde2
Nufip2
Mtg2
Rnd3
9030025P20Rik
Bcar1
Dcpp1
Hps5
Gtf2h1
Pnp
Mybpc3
Rai1
Utp14b
Acsl3
Hsp90aa1
Zswim8
Hrh2
Spg20
Rnaset2b
Srsf5
Eif2s3y
Sntb2
Mbd6
Ddit3
Insig1
Zfp143
Stra8
Nudt1
Haus1
Atp5a1
Rnaset2a
Csrnp2
Cbx4
Ppp1r10
Mrps18b
Slc9a1
Rps12
Tmem135
Dnajb9
Uck1
Ccn4
Fut8
Sumf1
Atg14
Npbwr1
4921539E11Rik
Capn3
Pbld2
Hnrnph3
Ddit4
Klf6
Hoxa1
Zfp36l1
Mok
Rnf169
Sbk2
Calm1
Rbm14
Gm21992
Msh6
Gpx1
Ube2o
Acp6
Sgk1
Rnf103
H4c14
Gtf2a1l
Gtf2b
Ctsl
Sacm1l
Dcaf4
D230025D16Rik
Tro
Nop58
Hsp90ab1
Rfc5
H2-DMa
Brd2
Trim40
Fus
Raf1
Aplp2
Atp1a1
Gm648
Jpt1
Tbc1d10b
Mylpf
Fbxo31
Mpp7
Gadd45a
Hrob
Dpysl3
Rpgrip1
H1f3
Coro1b
Prdx1
Actb
Eif4g2
Gpcpd1
Sirt4
Dgat2
Trim41
Jam2
AU018091
Agrp
Clu
Mat2a
Tubb4b
S1pr2
Tcte3
Phc1
Ermard
BC005537
Id3
Cyfip2
Thrsp
Copz1
Arhgap19
Chd9
Trmt1
Nanog
Errfi1
Srsf2
Mfsd11
Men1
Sf3b1
Eif4a1
Mknk2
Mib2
Mis18bp1
Aven
Smarca5
Pcna
Dusp1
Nphs1
Nme1
Arl4d
P4ha1
Gucy1a2
Mcl1
Hagh
Fahd1
Letmd1
Dhx9
Wsb1
Kank3
Cdh12
Tnfrsf19
Ehd4
Dag1
Dgat1
Proca1
Trpm1
Slc12a7
Dhx8
Tefm
Dedd
Slc29a1
Mymx
Gapdh
Amd2
Amd1
Actn4
Btg1
Hnrnpa2b1
Cbx3
Snx6
Gtf2f1
Adck5
Ubxn2a
Arl6ip1
Mbd3
Faim
Znhit1
Vstm4
Plod3
Selenbp1
Amacr
Psmb7
Ndufa6
Zfp119a
Mrpl37
Eef2
Cyb5rl
Ago2
Clec11a
Trim7
Zfp980
Hbegf
Trp53inp1
Ftl1
Dpp4
Luzp1
Taar6
Agpat2
Tas2r134
Sema4f
Exosc5
Bckdha
Phf11d
Rab8a
H2bc1
H2ac1
Sertad1
Ankrd44
Xrcc1
Slc38a2
Pinlyp
Vegfa
Stpg4
Sephs2
Ifrd1
Nfe2
Resf1
Tmem116
Itpk1
Erp29
Tuba4a
A630095N17Rik
Pyroxd1
Slbp
Serpinf2
Spg11
Ppp2r5e
Zfp598
Gcm2
Ddx5
Cep95
Marchf3
Gtf2a2
Dmxl1
Mill1
Hjurp
A730008H23Rik
Lman1
Ifna6
Cela1
Dhx32
Chn2
Gtf3c6
Kcnn2
Atg4d
Omp
Nsrp1
Zfand5
Rita1
Ddx54
Slc38a5
Cog6
Sema4b
Nsd1
Fgl2
Fn1
Tmem107
Tnrc6c
Lgi4
Fxyd7
Fxyd1
Fah
Tob2
Plxdc1
Rps6
Rpl11
Prdm14
Btrc
Rhob
Pabpc1
Sqstm1
Fos
Rpl26
Ppp1r3c
Skp1
Zfp710
Acly
Txlng
Itpr1
Sod1
Zfp438
Klf7
Cnga1
Pbk
Eif1
Tpst1
Cpt1a
Vcl
Peli1
Tlcd1
Gfod1
Gja1
Rcbtb1
Dennd6a
Vamp1
Slc25a3
Etv3l
Vars
Spred2
Gipc1
Gc
D17H6S56E-5
Agbl5
Katna1
Cep43
Ankrd11
Tmem205
Ccdc159
Cat
Nudcd2
Hmmr
Eprs
Map4k4
BC031181
Slc25a39
Muc1
Ep400
Ppp1r15b
Mnat1
Dhcr24
Trp53inp2
Tmem64
Msmo1
Dnaja1
Slfn4
Zfp979
Wsb2
Dpysl2
Spata16
Eef1a1
Klk8
Pitrm1
Ubc
Hnrnph1
Dcaf5
Inmt
Grap
Adamts19
Mad2l1bp
Shoc2
Extl1
Bbip1
Ccnyl1
Mafb
Ttc39c
Slc9a3r1
Maml1
Mfsd14a
Mllt6
Lgals9
Havcr2
Rpl36al
Mgat2
Ghdc
Epha2
P4hb
Eif4ebp2
Arhgap27
Ddx20
Sgpl1
Rps3
Ubr4
Tmem60
Phtf2
Ass1
Glul
Vgll4
Rps20
Ino80c
Jun
Sap18b
Sap18
Plk2
Mterf1b
Ncl
H2-M5
Rpl23
Kazn
Clic4
Snrpe
Mbtps1
Traf7
Spc25
Ltn1
G6pc2
Herc2
Pdia3
Catsper2
Styxl1
Mdh2
Cebpa
Smndc1
Gm10710
Fam174c
Cirbp
Nfam1
Gfpt2
Tor1b
Ppp1r2
Ctnnb1
Sap30
Sirt3
Psmd13
Trim58
Slc22a23
Txn1
Mterf1a
Znrf1
Sirt1
Defb48
Rpl8
Commd5
Ttc41
Kmt5b
Hsp90b1
Vmn2r55
Ush1g
Otop2
Avpr1a
Nr6a1
Ubap1
Impdh2
Tra2b
Idi1
Frat1
Cdkn1a
Pnpla8
Rab13
Sec22c
Ipmk
Cisd1
St3gal3
Sec22b
Phactr3
Nup50
Il12rb2
Pbx2
Gria3
Gpsm3
Baiap2
Trpm3
Rps9
Rnf125
Muc5ac
Kctd5
Frmd6
Zfp1
Ubr3
Ptpn6
Grcc10
Fasn
Dnajb6
Il1b
Uspl1
Tcta
Rhoa
Mrpl44
Limch1
Ppp1r15a
Plekha4
Prr5
Prmt8
Ncor1
Ankrd28
Cxcl5
Spry2
Mertk
Tmem235
Susd6
Gnai3
Cpm
Hhex
Epb41
Arg1
Urgcp
Hs3st3b1
Cenpm
Pcmtd1
Lilr4b
Orai1
Gls
Taok3
Trim17
H3f4
Arvcf
Tmem79
Tmbim6
Smg5
Olfr1128
Atp5e
Afg3l1
Tsc22d2
Gabrb3
Otub2
Ccdc102a
Adgrg5
Ndel1
Bcl11b
Atp1a4
Chchd1
Cdh20
Ammecr1l
Abcb7
Map1lc3b
Cln8
Slc25a30
Napepld
Gnl2
Hnrnpu
Gca
Sesn2
Il3ra
Rpl17
Mrpl21
Ighmbp2
Gpr141
Ttc25
Paxip1
Fam207a
Slc5a3
Slc44a3
Mrps6
Hmga1b
Hmga1
Olfr1396
Klf10
Por
Myo1d
Erf
Slc25a51
Rilpl2
Pdhx
Nxf1
Apip
Klhl21
Gas1
Txnip
Mllt10
Kifc3
Fdx1
Cep85
Rxrb
Npy5r
Mrpl1
Pnma2
Mylip
Id2
Sh3yl1
Acp1
Misp3
Lsm14a
Kcnk4
Rara
4932438A13Rik
Zfp219
Ncapd2
Myo10
Mrpl51
Ctnna3
Chordc1
Ints11
Cptp
Abhd17c
Eepd1
Dusp5
Chchd2
Zfyve28
Ppp3ca
Hspa1l
Hspa1a
Cfap99
Ccdc58
Pgbd5
Depdc1a
Acer2
Nfkbia
Dnajb1
Arrdc3
Siah2
Fmc1
Dnajb4
Megf8
Med23
Arhgef26
U2surp
Slx1b
Rwdd2b
Creb1
Bola2
Opa1
Ncoa3
Mrpl39
Kdm4c
Zfp821
Slc22a21
Cfap126
Ckb
Mocs1
Man1a
Kntc1
Fyco1
Ct55