ChIP-Atlas: Target genes

Potential target genes for Rfx3

Query protein: Rfx3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX7671907 | Embryonic brains
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rfx3's Target genes

◢ Rfx3: Average

◢ SRX7671906: Embryonic brains

◣ SRX7671907: Embryonic brains

◢ SRX1161945: MIN6B1

◢ Rfx3: STRING

Sema4b
Yif1a
Tmem151a
Cnih2
Tmx4
Ssbp2
Tcstv3
Cfap54
Chd4
Mks1
Tox2
Metrn
Fbxl16
Wdr90
Mcrip2
Ncoa5
Tppp3
Ssbp4
Isyna1
Elmod2
Ttc39d
Srsf7
Zmynd12
Ppcs
Ccdc30
Dnajc16
Casp9
Mapre3
Sik3
Pafah1b2
Hydin
Rfx1
Map9
Ttll10
Bbs5
Nudt2
Kif24
Ubl5
Pin1
Fbxl12
Gdf1
Cers1
Zdhhc1
Lrriq1
Pnma1
Cfap298
Ufsp2
1700029J07Rik
Anks3
4930451G09Rik
Spef2
Sdcbp
Rrh
Gar1
Cfi
Fgf14
Adgrg1
Cfap20
Muc1
Pold3
Ccdc57
Cfap65
Fosb
Mafk
Fhad1
Cfap44
Tctn1
Xrcc1
Pinlyp
Syt5
Fam204a
Ccdc39
Ropn1l
Golgb1
Eaf2
Lrrc49
Tecpr2
Cinp
Hspa12a
Eno4
Eif2b2
Fam227b
Dtwd1
B9d1
Tctn2
Mink1
Wfdc3
Dnttip1
Dusp18
4921536K21Rik
9530077C05Rik
Wdr31
Bspry
Lztfl1
Ubn2
Prdm4
Ascl4
Samd4b
Gmfg
Prkcsh
Ccdc151
Fam214a
Etfrf1
Casc1
Dync2h1
Dcun1d5
Irak1bp1
Mindy4
Morn2
Dhx57
Eif4a3
Card14
Sipa1l1
Slc6a19
Pigx
Cep19
Wdr34
Ccdc181
Rpl30
Erich5
Akap11
Fbxw7
Mapk8ip1
1700029I15Rik
Zcchc3
Sox12
6820408C15Rik
Nucb2
Dad1
Abhd4
Fos
Ppm1e
Sik1
Poll
Dpcd
Trip4
Csnk1g1
Dyrk1a
Tex44
Setd1a
Orai3
Stoml2
Pigo
Fam214b
Saxo2
Efl1
Iqsec1
Ywhaq
Hspbp1
Brsk1
Tmem138
Cyb561a3
Josd2
Aspdh
3110082I17Rik
Map6
Csnk1g2
Srek1
Gtf2f1
Txndc17
Med31
4933427D14Rik
4930563E22Rik
Rlbp1
Fanci
Tmem237
Kifbp
Ccdc113
Cbx5
Gstt2
Arl6
Ccdc13
Trappc9
Mlec
Rundc1
Ptges3l
Aarsd1
Lmbrd1
Rfx3
Fez1
Tlcd3b
Aldoa
Dyrk1b
Phc2
Fbl
Pofut2
Pak1ip1
Shroom3
Ccdc158
Wdr66
Tctex1d2
Cetn4
Bbs12
Fam131a
Ptpn13
Rara
Cirbp
Cep112
Midn
Meig1
Dclre1c
Tspan31
Marchf9
Cdk4
Rer1
Morn1
Klhl18
Kif9
Mettl15
Kif18a
Ddt
Cabin1
Katnal2
Ankfy1
Nr2f2
Nup50
Jam3
Cep41
Tmem9
Rtca
Dbt
Pfdn5
Myg1
Dync2li1
Lrrc56
Hras
Prr7
Foxj1
1700030J22Rik
Usp30
Svop
Rsph1
Morn3
Ankrd13d
Tsnaxip1
Ranbp10
Pltp
Prr3
Gnl1
Abcf1
Ttll9
Tceal1
Wdr78
Mier1
Wdr60
Stk32c
Lrrc27
Cherp
Map1a
Dpf1
Lmna
Eri3
Trim2
Sde2
Ccdc184
Asb8
Pi4k2a
Morn4
Mycbp
E4f1
Dmwd
Dmpk
Armc3
Ccdc65
Lfng
Nek2
Lrrc6
Fam183b
Wdr27
1600012H06Rik
Pifo
Tbc1d32
Lmtk3
Brd3os
Ccdc34
Zfp523
Zc3h3
Gemin8
Klhdc10
Ap3m2
Tasp1
Mtf1
Upk3bl
Sirt3
Psmd13
Osbpl7
Mrpl10
Lrrc46
Cfap36
Timm10
Smtnl1
Cep162
Ube2o
Crnkl1
Cfap61
Dyrk3
Ywhaz
Ap1s1
Tbcel
Cnpy3
Oscp1
Ebna1bp2
Cfap57
Sctr
Cfap221
Sun3
Gm11992
D3Ertd751e
Socs3
Smg7
Etfbkmt
Gcc2
Dixdc1
2310030G06Rik
Wdr35
Tmc3
Efcab1
Maats1
Cox17
Neurl4
Acap1
2810408A11Rik
Tpi1
Spsb2
Usp2
Sf3a1
Ccdc157
Vangl2
Agbl3
Ppp2r1a
Yipf3
Polr1c
Lrrc73
Tsga10
Lipt1
H1f10
Cfap161
Prepl
Camkmt
Rnf141
Nap1l1
Tube1
Fam229b
Zfp628
Ssc5d
Nat14
Caly
Tpm3
Ift74
4933434E20Rik
1700094D03Rik
Zfp839
Mok
Marchf8
Bbs1
S1pr3
Cfl1
1110051M20Rik
Cyp46a1
Oxnad1
Dph3
Smpd2
Ppil6
Nbr1
Brca1
Dok3
Ddx41
Kcnn1
Ccdc124
Tlx2
Pcgf1
Lbx2
Chchd3
Rpgrip1l
Fto
Wdfy1
Jund
Iqcn
Rgl1
Arpc5
Agtrap
Sirt7
Pycr1
Mafg
Nme7
Blzf1
Prkar1a
Ptdss2
Dnah2
Chchd6
Wdr6
P4htm
Cln6
Tmem91
Tgfb1
B9d2
Gnat2
Gm12500
Ampd2
Sh3bgr
Lca5l
Bbc3
Mthfr
Clcn6
Ifi27
Ddx24
Galk2
Cops2
Ap1m1
Sertad3
Cplane2
Peli1
Rlf
2410004P03Rik
Uvrag
Kmt5c
Lrrc23
Eno2
Trit1
Iqch
Aagab
Gde1
Ccp110
Nkiras2
Dnajc7
Dbn1
Setd4
Cbr1
Pitpnm1
Cdk2ap2
Trub2
Pick1
Itsn1
Cryzl1
Rin1
Brms1
B4gat1
Asb7
Tmem17
Mfap4
Mapk7
Pak4
Cfap69
Kcnip3
Ift57
5031439G07Rik
Ppp5c
Ovca2
Hic1
Ppp1r7
Pask
Ubxn6
Hdgfl2
Lrguk
Spata7
Mib2
Thnsl1
Enkur
Zfp24
Cfap97d2
Traf3
Lcorl
Srms
Fndc11
Cfap43
Rpl35a
Lmln
Iqcg
Tada2b
Ccdc96
Gpn3
Fam216a
Mbd4
Ift122
Ripor1
Camk2a
Plch1
Hat1
1700037H04Rik
Pbx2
Gpsm3
Ak1
Tubgcp3
Daam1
Dffb
Cep104
1700010I14Rik
Srf
Cul9
Nsmce1
Gtf2e2
Rnf32
Ralgapa1
Arvcf
Rhbdd2
Katnal1
Intu
Dnajc1
Ccpg1os
Ccpg1
Dnajc25
Spef1l
Gnb2
Tomm7
Lyrm4
Fars2
Armc9
Sf3b5
Kif6
Mfsd4b4
Ino80c
Nectin4
Klhdc9
Txndc11
Ankef1
Slc4a8
Cldn34d
Mpc2
Dcaf6
Stk40
Lsm10
Dlg4
Naa40
Tbc1d19
Prkar1b
Dnaaf5
Micos10
Efhc1
Ttll3
Dynll1
Cfap74
Rhpn1
Cdk9
Ttc41
Hsp90b1
Pgap3
Gsg1
Cenpf
Glipr1l1
Spats1
Mlf1
Parp4
Cenpj
Dcp1b
4930505A04Rik
Acap2
Dnajc10
Plcd1
Dlec1
Kdelr3
Kcnj4
A930007A09Rik
Mrps9
Nsdhl
Cetn2
Alms1
Pbx4
Lpar2
Rnf182
Mark3
Mns1
Zbtb46
Ccnc
Tm9sf1
Ipo4
Rabl2
AI429214
Marchf10
Crocc
Prmt5
Ubxn11
Cd52
Celf3
Lgals3
Psap
Tekt4
Thop1
Sgta
Plekhb1
Zfyve28
Cfap99
Klf2
Tnpo1
Pspc1
Spata2
Rnf114
Dpy19l2
Rsph14
Rab36
Ift52
Braf
Psmc3ip
Mlx
Dnajc15
Fam90a1b
Apoo
Tmem167b
Taf13
Ing1
Cars2
Hsdl1
Dnaaf1
Gtf3c4
Ddx31
Actr6
Dagla
Krt8
Kcnj14
Cyth2
Dnajc24
Mapre2
Spata45
Traf3ip1
Spata6
Parp8
Ptges2
Lcn2
Mapk10
Tfip11
Taok2
Nanos2
Mypop
Cdkl4
Ap3d1
Dnajc27
Nek11
Aste1
Zmynd10
Rassf1
Nprl2
Cyb561d2
Tmem107
Afg1l
Mrpl39
Iqca
Tmem218
Aopep
Ddit4
Ift81
Sgsm1
Abhd2
Tmem216
Qtrt2
Ccdc191
Fam151b
Uhrf1
Arrdc5
Arid4a
Odf2
Drc1
Rbks
Babam2
Copz1
Spg21
Leng8
Spag1
Polr2k
Trmt44
Acox3
Stxbp4
Cox11
Fgr
Ywhae
Spcs1
Glt8d1
Ndufs5
Stx18
Spice1
Derl1
Stpg1
Nipal3
Slf1
2210408I21Rik
Trim39
Wdr38
Rpl35
Arpc5l
Dnaaf3
Tnni3
Thbs3
Mtx1
Rfc5
Zfp407
Mzf1
Elfn2
Gtf3c1
D430042O09Rik
Timm13
Lmnb2
Gdf11
Sdccag8
Cep170
Tmem209
Ssmem1
Lpin2
Ccar2
9930012K11Rik
Ift22
Stk11ip
Tmtc3
Cep290
Adgra1
Dusp6
Nsun7
Mcidas
Ccno
Ift88
Igsf11
Cenph
Knop1
Iqck
Dnah11
Tmem108
Rpn1
Ttc26
Glipr1l3
Caps2
Ndrg4
Pomt2
Gstz1
Ubxn10
Pla2g2c
Orai2
Trip12
Fbxo36
Dennd2a
Fank1
Dhx32
Snapc2
Ctxn1
Tnks
Mast3
Mocs3
Dpm1
Itpkc
Coq8b
Myo1e
Rem2
Dmkn
Rab11fip2
Epb41l4a
Tcea2
Sox18
Dnah9
Mab21l4
Crocc2
Bub1
Abi2
Ift172
Gckr
Fndc4
Odf2l
Cep128
Dnaaf2
Ppp1r16a
Foxh1
Ehd1
Glb1l2
Ulk4
Olfr1344
Mapk15
Tmem89
Wdpcp
Mdh1
Ccdc187
Timm21
Fbxo15
Tex9
Stx8
Cfap52
Aqp4
Hepacam
Usp29
Peg3
Zfp580
U2af2
Ccdc106
Hsph1
Polr2f
1700088E04Rik
Cdca4
Tmem231
Gabarapl2
Psma5
Nacad
Slc25a3
Cfap20dc
Eif2s1
Atp6v1d
Rhobtb2
Hmgn2
Ccdc126
Slamf9
Igsf9
Arf2
Mxi1
Tusc3
D230025D16Rik
Stk19
Dxo
Ubxn2b
Snrpd2
Qpctl
Hmgcr
Rps6kc1
Phc1
Stk33
Bdh1
Junb
Hook2
Ankrd54
Rnf5
Agpat1
Ppm1g
Smc1b
Nme5
Tedc1
Crip1
Fam227a
Cby1
Sec61a2
Mtmr6
Wdr7
Coq3
Arfip1
Wwox
Gm1604b
Mapkbp1
Slc25a46
Pla2g2e
Hspa2
Zc2hc1c
Acyp1
Ppp4r3b
Fam110a
H13
Mfrp
C1qtnf5
Aspm
Spata17
Gpatch2
Ctso
Phf20
Mafa
Rrp12
Sorbs2
Srfbp1
Esrra
Catsperz
Acadvl
Itgb3bp
Efcab7
Cnnm2
Rps15
Apc2
Bbs7
Hsp90aa1
Smarcad1
Tufm
Slc25a14
Zbtb11
Rpl24
Tpgs1
Madcam1
Wars2
Zbed5
Chchd2
Notch1
Tmem29
Cacfd1
Cluap1
1700037C18Rik
Skiv2l
Nelfe
Rsph4a
Zmat2
Ppil4
Nsmf
Fzr1
Dohh
Rp9
Bbs9
Smpd3
Dcaf12
Pou3f2
Agbl4
Fbf1
Nap1l4
P4ha1
Cmtr2
Kif3b
Cep164
Bace1
Tuba1a
Cog7
Arrdc3
Pde4a
Pik3r2
Id2
Sfxn2
Arl3
Dhx16
Med9
Cystm1
Msi1
Dnal1
Map3k14
Pold2
Zswim2
Togaram1
Klhl28
Fscn2
Actg1
Calm2
Tctn3
Entpd1
Dym
Trpm2
Cfap410
Zfp688
Ndst1
Tarbp2
Map3k12
Sec16a
Usp20
BC005624
1700016K19Rik
Fstl3
Mcm7
Ap4m1
Nbas
Tsen2
Ppp1r12c
Zc3h10
Rpl41
Zdhhc23
Lbhd2
Exoc3l4
Rasl10a
Gas2l1
Cpd
Smdt1
Pheta2
Naga
Cplane1
Lsm2
Hspa1l
Hspa1a
Erich2
Safb2
Safb
Map7
Zfp287
Zbtb40
Gata2
Rtl6
Spout1
Endog
Lpin1
Tspyl5
Rsph3b
Ap2a1
Ccdc180
Fam98b
Dctn1
Wdr54
1700003E16Rik
Pcsk1n
Eras
Btbd9
Spag6l
Rpl31-ps12
Pih1d2
Nkapd1
Ruvbl1
Wdr13
Ung
Ska1
Cxxc1
Rap2a
Klhdc8b
Ccdc71
Ift27
Shq1
Wdtc1
Akna
Amz2
Ahi1
Dusp3
Cfap97d1
Zfp775
Repin1
Gm5111
Wfdc1
Smc6
Gen1
Myo10
Dnah10
Kiz
Capn10