ChIP-Atlas: Target genes

Potential target genes for Rfx3

Query protein: Rfx3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1161945 | MIN6B1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
Rfx3's Target genes

◢ Rfx3: Average

◢ SRX7671906: Embryonic brains

◢ SRX7671907: Embryonic brains

◣ SRX1161945: MIN6B1

◢ Rfx3: STRING

Orai2
Ccdc181
Bbs1
Bbs5
Cep162
Mks1
Msmo1
Rundc1
Ptges3l
Aarsd1
Snapc2
Ctxn1
Arl6
3110082I17Rik
Dync2li1
Cplane2
Zdhhc1
Wdfy1
Rnf32
Sdcbp
Tlcd3b
Aldoa
Wdr34
Zcchc3
Sox12
6820408C15Rik
Muc1
1110051M20Rik
Wdr31
Bspry
Ddt
Cabin1
Camk2n1
Klf2
Pkig
Elmod2
Pigx
Cep19
Sirt7
Pycr1
Mafg
Pold3
Igsf11
Mettl15
Kif18a
Oxnad1
Dph3
Tmem237
Wfdc3
Dnttip1
Cetn4
Bbs12
Wdr60
Etfrf1
Casc1
Srms
Fndc11
Fank1
Dhx32
Ppp1r16a
Foxh1
Jakmip2
Fam214a
Trub2
Ubl5
Pin1
Fbxl12
Nbr1
Brca1
Sf3a1
Ccdc157
1700010I14Rik
Rrh
Gar1
Cfi
Iqsec1
Hsdl1
Dnaaf1
Stk32c
Lrrc27
Trmt44
Acox3
Dner
Katnal1
Pnkd
Cyp46a1
Ufsp2
1700029J07Rik
Dync2h1
Dcun1d5
Gnaz
Samd4b
Gmfg
Dagla
Ccdc34
Tecpr2
Cinp
Irak1bp1
Sh3bgr
Lca5l
Cfap44
Srek1
Gstt2
Pnma1
Tctn1
Spata6
Phf20
Klhl18
Kif9
Prkar1b
Dnaaf5
Kdelr3
Kcnj4
Cenpf
Dyrk3
Yipf3
Polr1c
Lrrc73
Ptdss2
Ccdc74a
Dpy19l1
Poll
Dpcd
Matk
Spef1l
Ropn1l
Marchf8
Thnsl1
Enkur
Whrn
Gde1
Ccp110
Tsnaxip1
Ranbp10
Tnpo1
Pofut2
Meig1
Dclre1c
Tmem211
2900026A02Rik
Caly
Saxo2
Efl1
Nek11
Aste1
Maats1
Cox17
Morn2
Dhx57
Rab11fip2
Rhbdd2
Map1a
Ube2o
Zfp24
Cnpy3
Pak4
Fam227b
Dtwd1
Wdr90
Mcrip2
B9d1
Rlbp1
Fanci
Lmtk3
Chn1
Hdac11
Slamf9
Igsf9
Tctex1d2
Gtf2f1
Rnf141
Ccdc57
Naa40
Lyrm4
Fars2
Dnajc1
Dad1
Abhd4
Gsg1
Arl4a
Metrn
Fbxl16
Foxj1
Zc3h3
Dynll1
Pfdn5
Myg1
Ngef
Pifo
Nphp1
Mtln
Shq1
Dusp3
Cfap97d1
Tmx4
Armc9
Tmem209
Ssmem1
Ahi1
Fhad1
Smpd2
Ppil6
Iqch
Aagab
Dnaja1
Kif23
Syt5
Tbcel
Traf3ip1
Phc1
Ift57
Prkar1a
Tsr1
Sgsm2
Prkar2b
Wdr78
Mier1
1700016K19Rik
Akap11
Cep41
Tube1
Fam229b
Xrcc1
Pinlyp
Kif27
Foxn2
Micos10
Cep112
Tsga10
Lipt1
Sema4b
Prr7
Negr1
Cyb561
Tlx2
Pcgf1
Lbx2
Eml1
Socs3
Irf2bpl
Mindy4
Agtrap
Ubxn11
Cd52
Erf
Mapk10
Anks3
4930451G09Rik
Abi2
Wdr27
1600012H06Rik
Ift81
Msi1
Ccdc65
Lmna
Usp29
Peg3
Hmgn2
Tmem138
Cyb561a3
Hspa4l
H1f10
Zmynd12
Ppcs
Ccdc30
Tmem9
Mafa
Map6
Tbc1d19
Dnajc10
Spice1
Sik1
Ubxn6
Hdgfl2
Spats1
Stk40
Lsm10
Ptpn13
Zfp523
Mapre2
Etfbkmt
Rpl35a
Lmln
Iqcg
Trappc9
Ralgapa1
Kiz
Klhl3
Trit1
Ass1
Ywhaq
Tada2b
Ccdc96
9530077C05Rik
Dynlt1b
Chd4
Fam131a
Syngap1
Cuta
Id2
Neurl1a
Nucb2
Eri3
Sec61a2
Sik3
Pafah1b2
Cog7
Dok3
Ddx41
Setd4
Cbr1
Pick1
Eif2b2
E4f1
Efcab1
Yif1a
Tmem151a
Cnih2
Azin2
Mib2
Psd
Fbxl15
Nudt2
Kif24
Ovca2
Hic1
Rnf139
Ebna1bp2
Cfap57
Tspan31
Marchf9
Cdk4
Pak1ip1
Brd3os
Rlf
Cfap36
Lcorl
Prdm4
Dnah2
Sde2
Eif4a3
Card14
Rtca
Dbt
Ankef1
Dcp1b
Dffb
Cep104
Ift22
Rfx1
Rtl6
Jam3
Spg21
Mef2d
Sgsm1
Klf4
Oscp1
Trip12
Fbxo36
Bbc3
Adgb
Ing1
Cars2
Mcidas
Ccno
Ssx2ip
Rfc5
Ubxn2b
Wdr66
Mfsd4b4
Intu
Ankrd54
Fam98b
1700030J22Rik
Cln6
Mdk
Chrm4
Ncoa5
Ccdc39
Fsip1
Zbtb46
Fbxw7
Celf3
Stk11ip
Gemin8
Trim2
Fam183b
Rara
Fam81a
AI429214
Pcgf5
Fos
Parp8
Sytl3
Osbpl7
Mrpl10
Lrrc46
Cfl1
Eif5
Mapk8ip1
1700029I15Rik
Cirbp
Lrguk
Ywhaz
Iqce
Brat1
Ssbp4
Isyna1
Nek2
Rpn1
Atp23
Bub1
Nacad
Ssbp2
Ttc39d
Srsf7
Ppm1e
Mast1
Dnajc25
Otop2
Ush1g
Otop3
Dusp18
4921536K21Rik
Rrp7a
Sirt3
Psmd13
Acap2
Hsph1
Serf1
Bdp1
Rpl30
Erich5
Tmem17
Txndc17
Med31
4933427D14Rik
4930563E22Rik
Zdhhc23
Dmxl2
A930007A09Rik
Ddit4
Rap2a
Lmbrd1
Zfp36l2
Rfx2
Nphs1
Kirrel2
Katnal2
Mthfr
Clcn6
Lztfl1
Tex44
Prkcsh
Ccdc151
Rsph1
Usp30
Svop
Ankrd45
Med9
Dynlt1f
Dynlt1c
Plp2
Cdc37
Tmem216
Odc1
Tdrp
Rfx3
Cystm1
Mlec
Zfyve28
Cfap99
Cdkl1
Sys1
Ccar2
9930012K11Rik
Timm10
Smtnl1
Spag1
Polr2k
Sfxn2
Arl3
Lrrc10b
Dnajc16
Casp9
Golgb1
Eaf2
Kcnn1
Ccdc124
Nr2f6
Cacng8
Fam204a
P4ha1
Cdkl2
Id1
Ddx59
Sptbn4
Crocc
Prepl
Camkmt
Stx8
Cfap52
Slc25a14
Cmtr2
Ap1s1
Actr6
Zswim1
Spata25
Ctsa
Ankfy1
Arfip1
Tarbp2
Map3k12
Plin5
Plin4
Lrg1
Cibar1
Pbx2
Gpsm3
Tpi1
Spsb2
Rabl2
Kifbp
Gcc2
Sipa1l1
Ccdc184
Asb8
Tmem91
Tgfb1
B9d2
Mark3
Pkd1
Mycbp
Wdr6
P4htm
Spata2
Rnf114
Lrrc56
Hras
Tsen2
Abhd2
Tcea2
Sox18
Armc4
Ehd1
Akirin1
Trip4
Csnk1g1
Itsn1
Cryzl1
Ywhae
Mfn1
Zfp839
Mok
Fam167a
Dhx30
Npcd
Cbx6
Abhd11
Wdr35
Pnmal1
Spata33
Chmp1a
Axdnd1
Pi4k2a
Morn4
Tfip11
Per1
Leng8
Stox1
Ndufaf3
Impdh2
Dalrd3
Chchd6
Casp6
Snrpd2
Qpctl
Dyrk1b
Cfap69
Lrrc25
1500009L16Rik
Mapre3
Plxnb1
Tox2
Slc4a8
Glb1l2
Zc2hc1c
Acyp1
Tctn2
Thbs3
Mtx1
Kifc3
Fosb
Capn10
Phc2
Taf6l
Polr2g
Gata2
Junb
Hook2
Dcaf5
Sf3b5
Knop1
Iqck
Gnb2
Rhpn1
Smg7
Psmc3ip
Mlx
Hydin
Prr3
Gnl1
Abcf1
Dusp6
Csnk1g2
Kmt5c
Map7
Trpm2
Cfap410
Ptms
Lag3
4930453N24Rik
Ttll9
Cfap298
Jund
Iqcn
Cherp
Ppp1r7
Pask
Agbl3
Safb2
Safb
Qtrt2
Ccdc191
Tagap1
Hspa12a
Eno4
Tbc1d32
Odf2
Mzf1
Cacfd1
Fbxl2
D630045J12Rik
Gtf2e2
Fam151b
Cfap54
Ccpg1os
Ccpg1
Galnt2
Wdr47
Elapor1
1700013F07Rik
Shroom3
Ccdc158
Cfap58
Trim36
Hcn4
Cxadr
Pitpnm1
Cdk2ap2
Uvrag
Rin1
Brms1
B4gat1
Dynlt1a
Bbs7
Lrrc49
Nsmf
Mrpl22
Gemin5
Spata24
Prob1
Dyrk1a
Nsmce1
Ttc21a
Gorasp1
Tmem107
Wdr73
Nmb
Cfap20
Cars
E2f8
Gas8
Dbndd1
Rnf5
Agpat1
Eif2s1
Atp6v1d
Plxnb2
Kif3b
Ankrd13d
Cep43
Nap1l1
Aifm2
Vat1
Rnd2
Tasp1
Nanos2
Mypop
D5Ertd579e
Krt18
Skiv2l
Nelfe
Ttll10
Cfap97d2
Tusc3
Phyhipl
Asb7
Atg9b
Parp4
Cenpj
Stk19
Dxo
Stxbp4
Cox11
Vps13a
Zfp174
Olfr15
Arf3
Lekr1
Cep295nl
Klhdc8b
Ccdc71
Sertad3
Ctnna2
Ift74
Pcnt
2610028H24Rik
Alms1
Pum1
Tmem260
Nqo1
Taok2
Gnl2
Ak1
Rnf182
Aatk
Dym
Cacna1g
D3Ertd751e
Erdr1
Thop1
Sgta
Map9
Josd2
Aspdh
Ap1m1
Dhx16
2610524H06Rik
2610301B20Rik
Dnaaf2
Acot1
Celf6
Dlg4
Pomt2
Gstz1
Acadvl
Rtl5
Sorbs2
Tbc1d16
Ccdc40
Cfap46
Nme5
Tmem167b
Taf13
Klhl7
Sfi1
Eif4enif1
Spcs1
Glt8d1
Ift172
Gckr
Fndc4
Spag6
Ndufs3
Kbtbd4
Rer1
Morn1
Camk2a
Rrp12
Afg1l
Tspyl4
Gtf3c1
D430042O09Rik
Lrp8
Tent5c
Nup50
Tex9
Gm14685
DXBay18
Xlr5b
Tpgs1
Madcam1
Cep135
Celf5
Stk35
Tmtc3
Cep290
Marveld3
Gtf3c4
Ddx31
Ppp4r3b
Fbxl14
Pds5b
N4bp2l2
Cibar2
Tob1
Cfap65
Sec61b
Alg2
Ubn2
Plcd1
Dlec1
Slf1
2210408I21Rik
Zfp688
Hspbp1
Brsk1
Cfap43
Ap3d1
Lrrc6
Gnat2
Gm12500
Ampd2
Mpp2
Lrriq3
Fpgt
Zfp184
Cenph
Ift88
Spout1
Endog
Ap3m2
Tpm3
Plch1
Rsph14
Rab36
Xlr5a
Tuba4a
Stk16
Glb1l
Tmem231
Gabarapl2
Rhobtb2
Wdpcp
Mdh1
Mink1
1700019D03Rik
Cdc25b
Maco1
Rhd
Jun
Slc17a7
Pih1d1
Aldh16a1
Pkp4
Ccdc148
E030018B13Rik
Rgl1
Arpc5
B3galt5
Sphk2
Rpl18
Dbp
Car11
Hmgcr
Mical3
Kcnh3
Dnah9
Ing2
Tctn3
Sdccag8
Entpd1
Cep170
Dnal1
Unc93b1
Aldh3b1
Pnmal2
Wdr13
Mcm7
Ap4m1
Cdk9
Dnajc27
Dusp8
Ndufs5
Qrich1
Qars
Ndrg4
Zfp580
U2af2
Ccdc106
Agbl4
Riiad1
Ppp1r12c
Ppp2r1a
Setd1a
Orai3
Dmwd
Dmpk
Churc1
Pcm1
Entpd7
Trim39
Otub1
Apbb1
Nsdhl
Cetn2
Pak6
Sec16a
Trim7
Trim41
Myt1
Pard6a
Enkd1
Acd
4933405L10Rik
Klf10
Sptbn2
Slc27a1
Nxnl1
Fam222a
Klhdc10
Rpgrip1l
Fto
Hat1
Ankrd42
Mast3
Pcsk1n
Eras
Aopep
Dnah11
Bbs4
Poln
Haus3
Gpn3
Fam216a
Fzr1
Dohh
Ptges2
Lcn2
Rp9
Bbs9
Zfat
Ifi27
Ddx24
Tmem53
Armh1
Tppp3
Fstl3
Ptpn21
Zc3h14
Efhc1
Tcp11
Mfsd4b1
Cerkl
Fam90a1b
Apoo
Fscn2
Actg1
Ulk4
Efcab10
Xpr1
Daam1
Pcp4
Dnajc15
Mrpl39
Nme9
Gdpgp1
Cib1
R3hdm2
Denn2b
Zfp628
Ssc5d
Nat14
Snx13
Wdr19
Arrdc3
Gm5741
Fbxw9
Ube4b
Zfp90
Crip2
Lman2l
Fam187a
Eftud2
Ccdc103
Prrt1
Ppt2
Pik3r2
Bcl2l1
Mfap4
Mapk7
Odf3l2
Cfap74
Efnb3
Zfp664
Ccdc92
Tex26
Cluap1
1700037C18Rik