ChIP-Atlas: Target genes

Potential target genes for HOXC9

Query protein: HOXC9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX111320 | BE(2)-C
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
HOXC9's Target genes

◢ HOXC9: Average

◣ SRX111320: BE(2)-C

◢ SRX111321: BE(2)-C

◢ HOXC9: STRING

DEPP1
SLC6A2
NRL
DCAF11
TNFAIP2
GALNT16
TBC1D10B
MYLPF
HOXC5
NDUFS8
SCML4
PPP5C
TIAM2
ING3
KIAA0319
DRGX
NRSN1
GNL2
PIH1D1
ALDH16A1
HOXC4
OLFML2B
GLDN
UBXN10
GFRA3
GPR68
SEMA5B
TOMM40L
APOA2
KATNB1
DIABLO
FBXW2
P2RX1
C6
SLC17A8
MTRNR2L2
MSH3
DHFR
ABCA12
PRR13
WIZ
ZSCAN31
KCNAB2
FAM163B
RMDN3
TLE3
ILF2
TBX15
SYBU
LPIN1
HOXC6
GSX2
ITGB5
C1orf100
BFSP2
RIMBP2
RAPGEF2
ARFIP1
SLC7A14
CHD1
SLITRK5
SMYD3
STRN3
AP4S1
ZNF654
CGGBP1
KBTBD11
IGFBP5
LRRC15
CYTH3
EVI5L
CMTM4
NCK1
VAV3
KL
ATG9B
ABCB8
LIMS1
LENG9
USP7
GPR83
KCNK16
TAS2R20
FAM161A
NPTXR
TSHZ2
C1orf185
CPO
MTRNR2L8
ZBTB45
CCDC33
SLC12A3
CHCHD3
GGT1
GRWD1
ZBTB39
TCF4
PRKAG2
KHDC4
MFSD6
EPRS1
ADCYAP1R1
MRPS14
SLC25A25
ADGRD1
ZNF488
PLEKHS1
HAPLN1
MGAT4C
GDF11
C14orf180
KDM4B
PWWP2A
TBX2
STON2
FOXN4
GABRA1
IFT57
MECOM
PARVA
CITED2
C3orf52
PDZRN3
ZZZ3
PLA2R1
DNAJB8
ATF3
SULT1C4
DUX4
SUGP2
ARMC6
MACROD2
TMEM60
PHTF2
RET
VSTM2A
PPP3CA
INTS4
ASB8
ELAVL4
RSAD2
IQSEC1
CHD9
LOXL1
VSTM5
PHF14
PRKD3
OPRM1
EEF1AKNMT
QSER1
COX16
PHKB
ITFG1
MRPL28
RNF145
CDH18
HTR4
CRYBG1
TNFRSF19
CATSPER3
ID4
PLAC1
TBCC
BICRAL
RHBDD1
TFPT
PRPF31
TUB
TUBG1
RETREG3
GJA5
H3C15
H3C14
H2AC19
H2AC18
TIMM44
MAP1LC3B
FBXO31
MFSD12
TRIL
CEP152
PSMC1
CALM2
EXOSC2
ZNF552
SEMA4B
ABAT
CTDSP1
RP1L1
NEMP1
CENPF
CASQ1
PIGM
CCNG1
FDPS
NTN3
PLEKHA5
HES6
ZNF555
PRR25
MAD2L2
SH3GLB2
MEX3B
BAHCC1
GALK1
RBM25
TMEM79
SMG5
RNF4
ZFPM2
PHOX2B
TMOD1
PCOLCE2
SUPT7L
SLC4A1AP
NRG1
CHST6
SIRT4
SRP14
ARL14EPL
HOXA6
HOXA3
ATP5MC3
PPM1A
SGIP1
ASF1B
LINGO1
RBKS
BABAM2
PHLDB1
RAPGEF3
RUFY3
KCNJ3
ZNF667
COMTD1
CHRM3
SLC18A1
USP40
CLASP2
SARS1
RAB39A
TOM1
PBX3
DRD2
ZNF510
KCNK15
GOLGB1
PODN
FILIP1
ITSN1
CRYZL1
DGKB
MAPK13
PDCD1
FRMD3
ALG10B
MN1
RBM12
CPNE1
KNL1
NT5C2
NSD2
ANKH
MTA1
ASNSD1
ASDURF
FOCAD
UHMK1
COX7A2L
PDCL
PRKG1
PAFAH1B2
TBC1D4
MTRNR2L1
DAOA
RARB
MOV10L1
MLC1
DPP9
B3GLCT
TIGD6
HMGXB3
TFB2M
CNST
WASHC1
PRKAR2B
ADGRE5
ANKHD1-EIF4EBP3
ANKHD1
RABGAP1L
SELENBP1
TRAF3IP3
NGDN
PXYLP1
ARL15
SPINK5
INAFM2
TMEM245
ARID5A
DIPK1A
SORL1
ESRRB
CYP51A1
SLC31A2
LYN
DIXDC1
BCL9L
CDIPT
LIMA1
RIC8B
DHRS2
WNT5A
ZBTB38
SMARCD2
TNS1
EFCAB6
C3orf38
GCSAM
COG3
PMVK
ITM2C
CP
TPCN1
NUF2
LSM5
AVL9
ERCC6L2
MTA3
KCNG3
UBL4B
TMEM126B
DLG2
MORC3
SMAD9
DLX6
TPGS1
ASXL2
ISLR2
PCDH15
ULBP3
PAXBP1
SGSM1
GRK3
CWF19L2
SLC41A2
TRUB2
COQ4
HEBP2
PRRT4
APMAP
NOMO3
NOMO1
DPH2
ATP6V0B
MAP2
AMOT
FAM219A
DNAI1
ARL17B
ARL17A
SLC17A2
ACVR1
TCERG1
TPM1
NFYC
WDR74
STUM
VPS52
RPS18
AFF3
AMMECR1L
TFAP2A
RAB11B
ICA1
TTC12
TDRD9
ATP5MPL
AP3M2
BCAS2
SLC22A8
GGCT
IRF2BPL
PGM2
HEXIM2
ADAMTS19
IGDCC3
BEND4
PRRC2B
LOC283710
THUMPD1
PLXNA1
KIF26A
UTS2R
AGTR1
NOMO2
TUBB1
KHSRP
PSMB2
ZNF132
DBH
RPP25
RPL6
KRT19
WDR89
CAMK4
NECAP1
CLDN4
FREM1
DHX16
PLEKHG5
IFI27L2
TMBIM6
COL5A2
CSDE1
FZD6
SFR1
AOPEP
FOXP1
CUX2
PWWP3A
GBA
DACH1
PSME3IP1
GNA12
SYNPO
AHCYL1
NUMB
E4F1
CCDC9B
SPART
BAMBI
SRPK2
SLC4A2
MRPS15
CLDN11
CDK5
SYNE3
CUL2
NTN4
RACGAP1
ASB6
CNOT3
RGMB
ZIK1
PPP6R1
KIF3B
NME7
BLZF1
CCDC89
BLOC1S6
MRPS33
TYW1B
CARS1
RMDN2
SNAP23
SLC36A4
SSRP1
P2RX3
SLC44A3
TBL1X
ZNF106
TRMT1
NACC1
FCF1
CREBL2
AREL1
ZNHIT3
ANTXR2
C12orf43
LUC7L2
FMC1-LUC7L2
FMC1
CMTM2
FAM107B
SORT1
ANO6
ZMYND8
SLC26A7
TOMM40
DAB2IP
HAGH
FAHD1
RALGDS
PRPF4
CDC26
IGFBP3
ZBTB40
TMCO5A
ZSWIM8
TBX3
SLC16A14
CHCHD1
RAB31
ZSWIM4
NOM1
ICE1
RFT1
HDAC9
ZBTB2
ARMH3
ZFAND6
MPP4
WNK1
RAB14
GSN
METTL7A
SLAMF8
CAND1
B3GNT3
FGF14
STRA6
SECISBP2
SH2D3C
SKA2
PRR11
RPRD2
EYS
HNRNPL
RALGAPA1
POGZ
STARD13
COPS7A
VLDLR
MRPL54
APBA3
PMPCB
RGS4
VEPH1
RASGRP1
KRT13
TUBB2B
HAND2
GNRH1
TMEM167B
ADAMTS17
RBM15
PDE4D
H2BU1
H2AW
TNNT2
MRPL44
FLYWCH2
BAX
MYL10
MAP2K4
INTS5
RNF14
RPTOR
NME8
MEIG1
GP5
THRAP3
ZNF629
TSPAN3
PLXDC2
SLC35B4
RNF24
CYTH1
ZCCHC8
DDX49
COPE
ZNF394
ZNF302
ZKSCAN5
TYW1
SBDS
ATXN7L3B
ADAMTS5
CFAP69
MYT1
ATP2B4
TSNAXIP1
RANBP10
BCHE
OPA1
LETM1
CERKL
ZNF317
TMEM106B
PLAAT1
PTPDC1
HES1
RPL27
CYP19A1
P2RY6
G3BP1
SIPA1L2
RUVBL2
GYS1
PSENEN
LIN37
PSMD6
EHD4
WAC
NEURL1
MATR3
TMEM101
CLDN15
GPR1
TMEM258
FEN1
CYP8B1
SNX7
PRKAB2
CHD1L
CHST12
PTPRE
TCTN3
H4C3
H1-6
ARID1A
PSMD3
ALK
MARCKS
PCSK6
MIA3
ZNF169
SART3
ISCU
CIZ1
PC
RPS7
HPS3
SEMA3C
ATP5MF-PTCD1
ATP5MF
ATP5F1B
ROBO1
ZNF350
STYX
EML4
VIPAS39
AHSA1
SPAST
MKKS
USF1
COL21A1
ARID5B
TRIOBP
RTTN
RPF1
PEX3
GPR34
CLPB
ATG2A
ADAT2
TSC1
GFI1B
FAM98B
OIP5
NUSAP1
CYP20A1
PNISR
TTYH3
OGDH
NUDT13
NETO2
C10orf88
TLX3
NDUFB5
MRPL47
ZFYVE26
RAD51B
WWOX
SH2B2
BTG2
EIF3F
MIDEAS
ZNF263
SUGT1
CCDC146
FRA10AC1
MYT1L
IPO4
TACO1
STAT3
SMC4
IFT80
SHC1
FLAD1
CKS1B
MC4R
MRPL27
EME1
THEMIS
TPD52
RBL2
TM9SF4
STK32C
LRRC27
PPP1R12C
FAM220A
LSMEM1
OSBPL6
BHLHE22
SMG7
SCHIP1
RPAP1
MAB21L2
EYA1
PRUNE2
CEP41
PCBD1
SNX22
NFATC4
DPP6
C7orf50
ZC3HC1
SHD
PACSIN3
HTR3B
XAB2
PCP2
AKAP11
RBFOX2
HNRNPA1
CBX5
TMEM232
AP2S1
TOX4
RAB2B
PIF1
MSX2
GABRR1
RBBP5
KLHL20
MBIP
ZNF777
WDR12
THAP4
STAP2
MPND
CARF
ABT1
SERP1
EIF2A
TAGAP
SLX4IP
YJU2
ZMAT2
SECISBP2L
APOLD1
KRR1
ZSCAN12
N6AMT1
GATAD2B
FBXW7
DPP8
LCN9
SMAD1
ELMO1
SP2
PLXNB2
FBXO7
RPL38
PTPN21
PPRC1
EPHB3
CALCOCO1
CCDC59
TUBA1C
FOXN3
SULF2
PRSS41
SDE2
OSBPL1A
LCT
DHRS3
ZBTB18
VPS25
UBE2F
TMEM70
TLR7
RNASE7
ELOC
COPS4
ANKRD17
MTHFSD
B3GNT4
KCNH2
TSPAN8
WDR36
RAB3C
ZNF821
ROCK2
CHRM5
EIF3D
ERMAP
LARP1
COX7C
SRRD
HPS4
STT3A
ADNP
ITFG2
TXN2
TEX9
RFX7
PAPOLA
GALK2
COPS2
HS3ST5
TUFM
SH2B1
FAM13B
GLE1
LBR
ZNF229
JARID2
OGFOD1
NUDT21
TMCO1
SMG8
RFX3
MYL1
KIFC3
HDGFL2
CHD8
PKD1L1
KDM7A
BAZ2A
STK11
ZFHX4
RBM28
ATF6
PES1
CEP120
SNX21
NDUFAF1
BANP
OSBPL9
PLEKHM3
MYCBP2
CHD2
ZNF566
PRKCSH
CCDC151
ZNF225
NCS1
RC3H2
SF1
ZNF614
PLA2G6
ISY1-RAB43
ISY1
GOSR2
EMC4
EAPP
RAD52
RTN4IP1
QRSL1
QDPR
CLRN2
UFD1
SF3A3
PSMB4
LRRC17
FAM167A
CDC45
HNMT
UTP25
LOC100289561
MSRB2
TOMM70
LNP1
TMEM69
GPBP1L1
ZMAT4
MYO1B
PRPH
NVL
RIMS2
POLR3E
ZNF331
RAB27A
LNX1
ZBED9
UBR2
DNM1L
ALG10
ANXA2
NFATC2IP
RNF6
RNF139
PYGO1
LMAN2
COG7
CENPA
H2BC6
ZKSCAN3
OGFOD2
HOXD3
SNX6
RNF224
CYSRT1
SETD1B
ARNT
TTR
ZNF493
SYT9
RNF208
ELL
CPT1B
CHKB
ARHGEF3
RPS26
POLR1H
FBXO34
ZNF148
ZNF548
ZNF264
C19orf67
SPRED1
NFIB
DNAL1
COTL1
CLN3
APOBR
SF3B6
FAM228B
CNOT1
STK11IP
WDR91
SUFU
ACTR1A
FKBP3
FANCM
SPRY4
LUM
PIP4P1
VPS41
NPL
KCTD3
FH
CDON
HERPUD1
ZNF227
VEZF1
MARS1
ARHGAP9
ZBTB25
NLGN1
MADD
IARS2
BPNT1
GNG12
LARS1
SELENOW
SYT15
VPS29
RAD9B
SSBP1
CUEDC1
UBB
PAPOLB
NDUFS4
LRWD1
LOC102724488
IKZF4
FUBP1
FHL2
DNAJB4
CGAS
CELA2A
ALKBH4
KCNAB1
PDIA6
SLC8A1
STX6
ZNF304
CALM1
MRTFB
TAS2R1
SLIT3
POLRMT
KBTBD8
GPR180
CDK5RAP1
AP3B1
MLLT3
DLC1
RPS11
NDUFAF5
ESF1
B3GAT1
TAS2R38
SPEGNB
SLC35B1
RINL
PRKCE
GMPPA
ANGPT2
ACSL6
SEL1L
HAPLN2
SFRP4
EPDR1
MRPL3
ZNF726
VPS50