ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441334 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◣ SRX5441334: HeLa

◢ SRX5441335: HeLa

◢ CPSF3: STRING

ZNF335
RABL2A
MAPKAPK5
SRD5A1
NSUN2
NVL
RABL2B
RWDD1
TSN
MRPS7
GGA3
DYNC1LI2
ICE1
SUDS3
NUP85
GOLM2
CAPRIN1
REXO1
NCLN
VTI1B
H4C14
CACTIN
H4C15
RBBP5
PSMD12
C19orf48
VDAC2
H3C15
H3C14
H4C12
OAZ3
GCN1
IPO13
SEC61B
VEZF1
ZC3H10
EFTUD2
CCDC103
POLR3F
DZANK1
RIT1
EXOSC5
BCKDHA
HSPA9
UPF2
SNAPC5
VARS1
NDUFA4
NME6
MRPL24
SKP1
PES1
EDC4
MTRNR2L8
COX7A2L
PI4KB
H1-2
HADHB
HADHA
UBE2I
LYRM4
FARS2
H4C3
C6orf226
EPN1
H1-4
H2BC5
ZRANB2
POLG2
SECISBP2
ZNF576
IRGQ
SUCLG1
ACTR10
SLC35B1
CDK12
DDX39B
BLCAP
AXDND1
MRPS5
H4C11
GRAMD2A
TLCD1
MRPL11
COX20
AMDHD2
PSMD1
STAM
CDC73
POLR2E
BAG6
APOM
NAT10
COMMD1
CCT4
CD68
DCTN1
TTC8
SUMF2
GOSR2
SNX16
USP1
MAD1L1
EIF4ENIF1
NRAS
DHRS11
ATP5F1E
CUL7
AKAP8
MTRNR2L2
C18orf32
H2BC4
H2AC6
B3GALT4
BICRA
PAK1IP1
C6orf52
WDR90
TSNAX
NUP205
RPN1
PSMG2
CEP76
RABGGTB
SUPV3L1
ANAPC7
PCBP1
SPATC1L
DAPK3
PDAP1
BUD31
FLOT1
INPP5E
ATAT1
DNAJC21
KRBA2
H3C2
H2AC19
H2AC18
SELENOF
HS2ST1
FAM104A
C17orf80
STAM2
TAF9
RAD17
AK6
FARSB
BAZ2A
GPAA1
VPS28
SART3
ISCU
H4C8
ATP5MG
H2BC21
H2AC21
H2AC20
MSH4
EIF2S3
FAM131A
GADD45GIP1
C19orf53
PAXBP1
SLC50A1
RPL21
RNF166
CTU2
ARF3
RAD23A
ADK
AP3M1
WDR74
TBCK
AIMP1
NPM3
PNO1
TIMM13
DNAJC9
ANKFY1
MAZ
C5orf15
TBK1
CCDC97
HAX1
ERCC6L2
HMCES
MAML1
CDH24
RRP36
RBM39
ECI1
DENND4B
TM9SF1
SYNRG
MAPK8IP3
COX18
H3C13
H2BC18
H1-5
DNLZ
SCRIB
DVL2
SRSF11
MLX
TUSC2
SLC35E3
CHMP2A
DNAJB14
POLR2J3
ZNF34
FAM174C
PTGES2
PDHX
APIP
IDI1
GOLGA5
KMT2A
JMJD8
C17orf49
ZNF276
VPS9D1
RXYLT1
MRTO4
EMC1
NECAB3
RPS27A
CLHC1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DPH7
RPS23
ATP6AP1L
MRPL38
TMED1
PRRT2
PIN4
SEC31A
RCOR3
YJU2
SMC2
DPH6
ZNF580
PCBD2
H3-3A
NDUFA10
MMP24OS
MMP24-AS1-EDEM2
SYCE2
RPL35A
IQCG
TMEM132A
GLRX2
PYGO2
LOC101928120
GET4
PIP4K2B
H2BC11
H2AC11
ARFGAP2
RBKS
BABAM2
SLC25A10
ENAH
SIRT7
EXOSC6
TMPPE
NANOS1
GLB1
PROSER1
NHLRC3
SNAP47
DENR
TMEM230
MAN2C1
RPS12
ABTB1
NUDT4B
NUDT4
PHF1
DONSON
SCAMP3
NDST2
GGA2
ANKLE2
OTUD7B
GTF3C4
DDX31
MEMO1
ZNF513
PRKAG1
ULK3
DPY19L4
SF3B3
COG4
TARS3
EIF2D
HSPA1B
UFM1
LRRC37A3
DRAP1
C11orf68
MRPL40
HIRA
CCDC138
MORC3
RABGAP1
RPL7
RDH10
BCAP29
KIF27
ZNF341
TAF10
CMTR1
CISD3
XPNPEP3
ST13
USP21
DYRK1B
MYG1
POLR2C
RHOT2
PAF1
MED29
ADNP
CNPY2
CTNNB1
C5orf24
EGLN1
DGKZ
HYI
C7orf26
PNMA1
PACS1
CLK3
ATXN7L2
ZNF398
NAXE
CCDC34
AGO3
MORF4L1
PPFIA4
TBC1D13
GPS2
ADARB1
ROGDI
PPP3CB
H4C1
H3C1
TOM1
ZNF653
MOV10
LAMP1
ALKBH5
POMZP3
HNRNPU
SURF6
ATXN2
NFAT5
H2BC12
H2AC12
PABPN1
STRIP1
GTF2IRD2B
GTF2IRD2
CXorf38
ZNF76
BRWD1
PRRC2B
POLDIP3
UPF3A
KLF12
FUT11
NME3
KIAA2026
NDUFS3
KBTBD4
TRAP1
SELENOH
IMPDH2
COMT
RUFY2
H4C5
DESI2
PCDH9
PRKRIP1
B4GALT7
ZMIZ2
RAB4A
ZNF862
FAM118A
FAM83E
RUVBL1
NOXA1
EEFSEC
MEPCE
ZNF865
ZNF383
PRSS27
PDE4DIP
IBA57
KMT5B
H4C2
TSPAN10
NPLOC4
C17orf75
TRIM65
SLC39A13
TXLNA
HMGN2
RCE1
ST3GAL3
RPS29
LRR1
FDX2
CELF1
SMYD2
NOLC1
RICTOR
GPX1
BAG2
POGZ
MTHFS
FNBP1
GORAB
PPP1CC
AKT3
PCBP4
BNIP3
SLC25A42
NDUFS7
CHAF1B
ASXL1
KAT6A
STMP1
SH3BGRL3
HIPK1
MAP3K12
CUL9
PURA
H3C4
H2BC7
H2AC7
SMG5
FBXL3
VARS2
SRRT
ZFAND6
LMBR1
PCBP2
RRM2
GDI1
FLOT2
CTNNAL1
SSX2IP
MTF2
MKRN2
ATPAF1
XRN1
HNRNPF
VPS4A
TMEM150A
UFSP1
RASA4B
CPSF1
KDM3B
DIDO1
SAMD1
ACBD6
HMGN1
TTC33
NCBP3
CHD1L
FBXO4
SUPT4H1
TMEM267
DSTYK
CCDC88A
LUC7L2
LLGL2
C8orf82
NOTCH2
NAPRT
TIGD3
NUB1
CRTC2
SRCAP
NUDT16L1
LOC730183
HDAC10
TP53BP2
CSRNP2
ANKRD54
ABL2
SPCS1
GLT8D1
GOLGA1
DDX59
TMEM179B
PDCD6
NCOA7
SCO2
JMJD4
RFX1
PYCR2
ZBTB45
FAM207A
KANSL1
AGK
KMT2C
WDR37
TAOK2
B3GALNT2
RNF225
DERA
ACBD3
SRSF4
NDUFB2
NBPF1
GTPBP3
GBA
ANO8
CD320
SCAP
PWP2
LOC102724159
TRAPPC8
THEM4
PDCD2
SETD6
SOD2
GPN2
NXF1
COX19
OSGEP
DDAH2
APEX1
DECR2
TM2D3
UBA2
RABIF
PARP1
CIRBP
MFSD14A
MTRF1L
PRKAB2
TCF3
BOLA3
LRRC40
ACADM
PANK3
GFER
DIAPH1
H4-16
UBE2Z
STIMATE-MUSTN1
STIMATE
CDK11B
CDK11A
BRAF
CASP6
RSAD1
MARCHF7
PRRC2A
MCOLN1
TNKS1BP1
MARCHF6
FAM20B
BMI1
STK36
RNF25
ARHGEF11
SLC24A1
PMF1-BGLAP
PMF1
SKIDA1
MTARC1
DLG4
ACADVL
ZCWPW1
C7orf25
IREB2
LBR
WDR27
C6orf120
VWA7
GAA
FAM199X
PHIP
DEDD
CCZ1B
VANGL2
H2BC17
H2AC17
WIZ
FAM228B
DNAJB12
COG2
TIGD1
SMIM19
SLC20A2
EIF4E2
RRNAD1
ISG20L2
ARHGAP35
THOC5
LRP6
BHLHE40
POM121C
CALM1
NUTF2
CENPT
SEC61A2
JAK1
B3GAT3
NUCKS1
TRIP13
TFAP4
PRDX1
NSFL1C
BRD9
FOXJ3
RNF187
RABGGTA
URB2
TAF5L
ZNF581
ARSG
PUF60
TPTEP2-CSNK1E
SMIM13
NBPF15
GPR180
FPGS
EDEM1
KLHL11
RPL6
PTPN11
RRP8
LATS1
ILK
GATAD2B
AKT2
SCFD1
PXK
CCSAP
SCAI
RPS10-NUDT3
RPS10
CHD8
TOMM20
THAP3
PATJ
LAMTOR3
DCAF10
SDCCAG8
CEP170
WDR48
SRRM3
SCN11A
RAD54L2
FAM219B
EHMT1
SMN2
SMN1
GMPPB
ARHGAP11A-SCG5
ARHGAP11A
URGCP
EPHX1
MAP3K2
NCAM2
ITGB3BP
EFCAB7
CACFD1
ZFYVE9
UBE2J2
RIPK1
NELFB
ARHGEF1
SLC44A1
METTL9
SP2
UNC119
STAU1
ZNF652
PRR7
NUF2
MATR3
INKA2
DDX20
ZER1
SLC26A11
ENOSF1
SSRP1
EIF4H
C6orf47
PTCD1
EYA4
CPSF4
SF3B6
DENND2B
ZNF35
KAT8
SLC12A6
SETD5
PCNX2
NT5C
DNAJC25-GNG10
DNAJC25
RBM4
ZBTB2
FAM76A
RNF220
POLD1
PEX7
NOL7
EIF4A1
VCP
RILP
BTBD10
PAIP1
H2BU1
H2AW
CCDC130
SEC11C
FBXW2
TRIM52
STC2
PSMG4
TMEM68
TGS1
RRAS2
OPN3
MCL1
H2BC13
H2AC13
CHML
ZNF326
CHUK
RAVER2
CZIB
ZNF251
CUL1
URGCP-MRPS24
TRAF4
IMPA1
WDR47
SFXN4
YBEY
MCM3AP
ORAI3
MIER1
ING5
EZH2
ZSWIM8
PPP1CA
DCP1A
ANKRD40
ECHS1
RGL2
ERLIN1
CLN5
REV3L
ATAD3A
MAPKBP1
LIX1L
CDC42BPA
STX18
E2F3
CEP350
POLG
CYBA
ZZZ3
ZNF446
TMEM222
SQSTM1
JPT2
GSTO2
COX5A
PUS7
NUMBL
SELENOO
FOXP1
GTF2H2
CEMP1
CDC5L
NR1D2
NKIRAS1
TONSL
CABYR
PHACTR2
FBXO28
TRIM3
SBF2
MBTPS1
ADSS2
NFKBIA
PIP5KL1
HSD17B8
AKAP1
ZMYM4
NPRL3
RPAP3
PLPP5
NSMCE4A
MLXIP
EXOC2
CNP
GANAB
EFCAB2
TOB2
SP1
PRKAA1
SP3
CRELD1
ZBTB4
TMEM43
CHCHD4
ATXN7
ZNF148
TRMT2A
RC3H2
RANBP1
PAM16
MRPL53
RPS19
ACTR8
STYX
SLAIN1
GCLC
AURKAIP1
SEC13
HAGHL
YARS1
S100PBP
KIF21A
FARP2
DTWD2
CD63
ANKRD36
RHOC
FRA10AC1
SDE2
ZNF511
TUBGCP2
OVCA2
MADD
MDM4
BACH1
ZNF445
YBX1
LIN9
IPO9
TSC1
TATDN3
ROM1
NSL1
GFI1B
EML3
AMZ2
SNAP29
PI4KA
MSI2
VPS36
TXN2
MRTFB
MKRN1
SH3GLB1
ADIPOR1
ZFX
XYLB
ATRIP
TPK1
HPRT1
GGA1
ZFAT
WDR24
MRPL12
ZNF48
AHRR
TRABD
SMARCB1
KRAS
KANSL3
AMACR
UBP1
RNF139
SATB1
PPP4R2
PEX3
ADAT2
PTPN4
PRKAG2
CCDC24
REPIN1
SLC25A22
RBM26
ZDHHC23
BPTF
SLC25A17
MUC1
CCAR2
PAFAH1B1
ARID3B
AGL
SMARCD2
FAM53C
CDC25C
NOM1
LRRC61
ACTR3C
TNRC18
ATP6V0C
MRPL58
DSG2
ATXN2L
NCKIPSD
SLC35A3
RCCD1
LMAN2
EPM2A
SPATA1
GNG5
EPB41
TOR1AIP1
CYB561D1
LSS
FBXW9
STX6
DHRS13
DEGS1
TRIM37
ZBTB20
SIMC1
NAA60
LMNB1
HMGB1
SMARCD1
KANSL1L
DISC1
CLUAP1
ZNF384
MTG1
MOB4
HSPG2
MCUR1
LRRFIP2
RWDD3
RAB11FIP2
QRICH1
MAPK1IP1L
INPP5K
TTYH2
DCXR
ADCK2
PSEN2
PDF
H3C10
CIZ1
ZNF740
UBA3
MAP2K2
GXYLT1
CSAD
CELSR3
ABCB10
ZNF786
UNC119B
MDP1
DRG2
C1orf53
ZNF668
ZNF646
RNF38
NEURL2
CTSA
COPS7B
ARL8B
RPP21
C15orf39
ZNF70
GALE
ZKSCAN2
TSR3
GNPTG
ZNHIT2
RRP1
ICMT
GNE
ARHGAP29
AP1S2
TRDMT1
SPIN1
HNRNPUL1
DALRD3
HOXA4
GTF2A2
BUD13