Database Description
| General information of database | |
Database name
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TMBETA-GENOME
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Alternative name
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Annotation of Beta-Barrel Membrane Proteins in Genomic Sequences |
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DOI
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10.18908/lsdba.nbdc00713-000 |
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Creator
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Creator Name
Michael Gromiha
Creator Affiliation
Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology
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Contact address
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Dr. M. MICHAEL GROMIHA Associate Professor Department of Biotechnology IIT Madras Chennai - 600 036 Tel: +91-44-2257-4138(O) E-mail:  http://www.iitm.ac.in/bioinfo/Gromiha/ |
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Database classification
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Protein sequence databases - Protein properties |
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Organism
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Database description
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TMBETA-GENOME is a database for transmembrane β-barrel proteins in complete genomes. For each genome, calculations with machine learning algorithms and statistical methods have been perfumed and the annotation results are accumulated in the database. |
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Features and manner of utilization of database
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Users can download lists of sequences predicted as β-barrel membrane proteins in FASTA format, which can be used for further analysis. The site also provides prediction tools, such as "TMBETA-DISC" and "TMBETA-SVM", which can discriminate transmembrane β-barrel proteins by inputting amino acid sequences. (These tools are not available in the LSDB Archive.) |
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License
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CC BY-SA Detail |
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Background and funding
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-
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Reference(s)
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Article title
TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences.
Author name(s)
Gromiha MM, Yabuki Y, Kundu S, Suharnan S, Suwa M.
Journal
Nucleic Acids Res. 2007 Jan;35(Database issue):D314-6. Epub 2006 Nov 6.
External Links
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| Original website information | |
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Database maintenance site
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National Institute of Advanced Industrial Science and Technology |
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URL of the original website
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- |
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Operation start date
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- |
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Last update date
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- |
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URL of the portal site
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http://medals.jp/elist/detail/70.html |
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Whole data download
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- |
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Referenced database
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NCBI, Ensembl |
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Entry list
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Not available |
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Query search
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Not available |
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Web services
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Not available |
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URL of Web services
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- |
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Need for user registration
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Not available |