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Life Science Database Archive
ChIP-Atlas

Analysis list

Data detail

info Data name Analysis list
info DOI 
info Version List 
info Description of data contents 

A list of metadata to generate file paths of analysis provided on ChIP-Atlas, target gene analysis and colocalization analysis. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc

info Data file 
File name:
chip_atlas_analysis_list.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/chip-atlas/LATEST/chip_atlas_analysis_list.zip
File size:
126 KB
info Simple search URL 
info Data acquisition method 

A list is generated from our result of analysis based on bed files processed by our pipeline.

info Data analysis method 

See details of data processing here: https://github.com/inutano/chip-atlas/wiki

info Number of data entries 

4,249 entries

Data itemDescription
Antigen Antigen
Cell type class in Colocalization Cell type class in Colocalization (comma separated)
Recorded (+) or not (-) in Target Genes Target gene analysis performed or not (+/-)
Genome assembly Genome assembly
Target Genes (TSS ±1k) Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 1 kb of each TSS (transcription start site).
Target Genes (TSS ±5k) Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 5 kb of each TSS (transcription start site).
Target Genes (TSS ±10k) Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 10 kb of each TSS (transcription start site).
Colocalization (TSV) Link to a TSV (Tab-Separeted Values) file that describes the protein colocalization with the given antigen in the given cell type class.
Colocalization (GML) Link to a GML (Graph Modelling Language) file that describes the protein colocalization in the given cell type class.