[ Japanese | English ]
About This Database

Analysis list

Data description
Data name
Analysis list
DOI
10.18908/lsdba.nbdc01558-003.V020
Description of data contents
A list of metadata to generate file paths of analysis provided on ChIP-Atlas, target gene analysis and colocalization analysis. See details here: <a href="https://github.com/inutano/chip-atlas/wiki#downloads_doc" target="_blank">https://github.com/inutano/chip-atlas/wiki#downloads_doc</a>
Data file
File name :
chip_atlas_analysis_list.zip
File URL :
File size :
126 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/chip_atlas_analysis_list#en
Data acquisition method

A list is generated from our result of analysis based on bed files processed by our pipeline.

Data analysis method

See details of data processing here: https://github.com/inutano/chip-atlas/wiki

Number of data entries

4,249 entries

Data detail
Data item Description
Antigen

Antigen

Cell type class in Colocalization

Cell type class in Colocalization (comma separated)

Recorded (+) or not (-) in Target Genes

Target gene analysis performed or not (+/-)

Genome assembly

Genome assembly

Target Genes (TSS ±1k)

Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 1 kb of each TSS (transcription start site).

Target Genes (TSS ±5k)

Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 5 kb of each TSS (transcription start site).

Target Genes (TSS ±10k)

Link to a TSV (Tab-Separeted Values) file that describes the genes bound by the given antigen in the range of ± 10 kb of each TSS (transcription start site).

Colocalization (TSV)

Link to a TSV (Tab-Separeted Values) file that describes the protein colocalization with the given antigen in the given cell type class.

Colocalization (GML)

Link to a GML (Graph Modelling Language) file that describes the protein colocalization in the given cell type class.