Database Description
| General information of database | |
Database name
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ChIP-Atlas
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Alternative name
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- |
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DOI
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10.18908/lsdba.nbdc01558-000.V020 |
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Creator
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Creator Name
Shinya Oki   
Creator Affiliation
Kyoto University
Literature Search
Creator Name
Tazro Ohta
Creator Affiliation
Database Center for Life Science
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Contact address
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Shinya Oki Department of Drug Discovery Medicine, Kyoto University Graduate School of Medicine Medical Innovation Center, 53 Shogoin Kawahara-cho, Sakyo-ku, Kyoto 606-8507, Japan E-mail: 
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Database classification
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Nucleotide Sequence Databases - Transcriptional regulator sites and transcription factors
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Organism
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Database description
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ChIP-Atlas is the database and its web interface to provide the result of analysis processed from the entire ChIP-Seq data archived in Sequence Read Archive. We have curated metadata described by original data submitter to enable further data analysis. See details here: https://github.com/inutano/chip-atlas/wiki |
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Features and manner of utilization of database
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Users can browse all peaks from published ChIP-Seq data, and the result of target gene analysis and Colocalization analysis. Users also can perform enrichment analysis by querying user data. |
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License
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CC BY-SA Detail |
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Background and funding
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-
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Reference(s)
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-
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| Original website information | |
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Database maintenance site
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Department of Drug Discovery Medicine, Kyoto University Graduate School of Medicine |
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URL of the original website
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https://chip-atlas.org/ |
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Operation start date
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2015/12/01 |
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Last update date
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2021/09/21 |
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URL of the portal site
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- |
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Whole data download
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https://github.com/inutano/chip-atlas/wiki#downloads_doc |
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Referenced database
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- |
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Entry list
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Not available |
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Query search
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Not available |
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Web services
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Not available |
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URL of Web services
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- |
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Need for user registration
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Not available |