Search for Database Metadata
| Database name ⇅ | DOI ⇅ | Database classification ⇅ | Organism ⇅ | Database description ⇅ | Features and manner of utilization of database ⇅ | Database maintenance site ⇅ | License ⇅ |
|---|---|---|---|---|---|---|---|
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Plabrain DB
(Planarian Brain Database) |
10.18908/lsdba.nbdc01108-000 |
Microarray Data and other Gene Expression Databases
|
Dugesia japonica
(6161)
|
Plabrain DB is a database for planarian nervous system analysis, including results of the gene expression profiling of single cells, the gene expression analysis by whole-mount in situ hybridization and the analysis by Immunohistochemical staining. This is the first case to release the result of gene expression analysis at the single-cell resolution by semi-quantitative single-cell RT-PCR (FBSC-PCR) method using FACS (Fluorescence Activated Cell Sorting) . |
Plabrain DB is featured by the unique method which combines the semi-quantitative single-cell RT-PCR with FACS to analyze gene expression in single neurons.
|
CC BY-SA | |
|
GETDB
(Gal4 Enhancer Trap Insertion Database) |
10.18908/lsdba.nbdc00236-000 |
Expression
Invertebrate genome database
|
Drosophila melanogaster
(7227)
|
About 4,600 insertion lines of enhancer trap lines based on the Gal4-UAS method were generated in Drosophila, and all of these insertion lines were tested for enhancer activity in embryo and larva by NP consortium. Moreover, the insertion position was mapped in the genome sequence form, and the correspondence relationship with gene was identified for 2,157 independent sites. This database is available to the public as the database that has compiled the insertion position and enhancer activity of Gal4 enhancer trap lines. |
The lines shown in the database are maintained and distributed by the National Institute of Genetics and Kyoto Institute of Technology. |
CC BY-SA | |
|
AcEST
(Adiantum capillus-veneris EST) |
10.18908/lsdba.nbdc00839-000 |
Nucleotide Sequence Databases
Plant databases - Other plants
|
Adiantum capillus-veneris
(13818)
|
This is a database of EST sequences of Adiantum capillus-veneris determined by Tokyo Metropolitan University, and the results of the blastx search between these sequences and UniProtKB/Swiss-Prot and TrEMBL databases. Although various plant genomes have been analyzed, the research concerning fern plants has not progressed among land plants (including seed plants, fern and moss). Considering Adiantum capillus-veneris, which has been used for photomorphogenesis research, as a model fern plant, EST sequence analysis of Adiantum was performed. |
AcEST is a database comprising about 30,000 items of EST sequence data of Adiantum capillus-veneris and additional secondary information. The database can be used to look for new genes in fern plants, to elucidate gene evolution and to collect gene information specific to fern plants. |
CC BY-SA | |
|
Dicty_cDB
(Dictyostelium cDNA Database) |
10.18908/lsdba.nbdc00419-000 |
Genomics Databases (non-vertebrate) - Unicellular eukaryotes genome databases
|
Dicty_cDB is a publicly available gene information database comprising the primary information obtained by EST analysis of Dictyostelium discoideum, which is known as a social amoeba, and a variety of additional secondary information. This database represents the results of the Dictyostelium cDNA Project in Japan for Dictyostelium discoideum. |
Sequences and BLAST search results of all ESTs and assembled unigenes are displayed for D. discoideum. Clones themselves are distributed by NBRP (http://nenkin.lab.nig.ac.jp/). |
Graduate School of Life and Environmental Sciences, University of Tsukuba |
CC BY-SA | |
| Gclust Server | 10.18908/lsdba.nbdc00464-000 |
Protein sequence databases
|
Database of sequence clusters obtained as a result of all-against-all BLAST search of proteins in 95 organism species. |
Gclust is characterized by the capacity to perform classification of homologous proteins with automatically setting the threshold of similarity based on the results of the BLAST search of all proteins of all organism species to be compared. Because a homologous culster can be generated even for proteins with unknown function, Gclust may also be useful to find proteins which play important roles for a particular organisms or taxa of interest through such a generated homologous cluster specific to the organisms or taxa. (phylogenetic profiling). |
CC BY-SA | ||
| Database name | DOI | Database classification | Organism | Database description | Features and manner of utilization of database | Database maintenance site | License |