ChIP-Atlas: Target genes

Potential target genes for HOXC9

Query protein: HOXC9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX111320 | BE(2)-C
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HOXC9's Target genes

◢ HOXC9: Average

◣ SRX111320: BE(2)-C

◢ SRX111321: BE(2)-C

◢ HOXC9: STRING

DEPP1
NRL
DCAF11
TBC1D10B
MYLPF
HOXC5
NDUFS8
SCML4
PPP5C
TIAM2
ING3
DRGX
KIAA0319
PIH1D1
HOXC4
KATNB1
SEMA5B
GFRA3
TOMM40L
DIABLO
PRR13
ZSCAN31
SLC17A8
ABCA12
KCNAB2
MTRNR2L2
SRGAP2C
SRGAP2B
WDR74
RIMBP2
ILF2
HOXC6
RAPGEF2
CHD1
ZNF654
CGGBP1
EVI5L
LENG9
ABCB8
TAS2R20
C1orf185
CCDC33
MTRNR2L8
CHCHD3
ZBTB45
ZNF488
EPRS1
SLC25A25
GRWD1
PRKAG2
KHDC4
MGAT4C
MRPS14
TBX2
PWWP2A
STON2
GABRA1
TMEM60
PHTF2
SUGP2
ARMC6
INTS4
VSTM5
EEF1AKNMT
ELAVL4
MRPL28
ASB8
CHD9
PHF14
RHBDD1
TUBG1
RETREG3
ID4
H2AC19
H2AC18
COX16
TNFRSF19
MTRNR2L9
PSMC1
TIMM44
TFPT
PRPF31
MFSD12
RP1L1
NEMP1
CENPF
CALM2
FDPS
ZNF555
RBM25
SUPT7L
SLC4A1AP
ABAT
CCNG1
HOXA3
ASF1B
SMG5
RNF4
SIRT4
RUFY3
PIGM
SLC18A1
SARS1
ATP5MC3
GOLGB1
ZNF510
ASNSD1
ASDURF
RAB39A
USP40
PAFAH1B2
TOM1
UHMK1
MLC1
PDCL
TFB2M
CNST
ITSN1
CRYZL1
ADGRE5
MN1
ALG10B
CDCA3
PDCD1
RABGAP1L
RBM12
CPNE1
NGDN
CDIPT
RIC8B
COG3
MTA3
PMVK
ANKHD1-EIF4EBP3
ANKHD1
ARL15
TMEM245
ESRRB
TRUB2
COQ4
CWF19L2
ULBP3
MAIP1
PAXBP1
DPH2
ERCC6L2
SMARCD2
MAP2
ACVR1
TCERG1
C3orf38
EFCAB6
NUF2
BCAS2
DLX6
AP3M2
RAB11B
PCDH15
THUMPD1
NOMO3
HEXIM2
NOMO1
PRRC2B
TMEM126B
DLG2
ZNF132
STUM
KHSRP
SLC17A2
VPS52
RPS18
WDR89
RPL6
NFYC
TPGS1
CSDE1
COL5A2
SFR1
AOPEP
GBA
TMBIM6
SLC4A2
CDK5
E4F1
NOMO2
DBH
MRPS15
KIF3B
CUL2
SYNE3
CLDN11
RMDN2
BLOC1S6
ZIK1
ZNF106
ZNHIT3
LUC7L2
FMC1-LUC7L2
FMC1
MORC3
CREBL2
FCF1
AREL1
DAB2IP
TCF4
RFT1
ZBTB40
C12orf43
HAGH
FAHD1
HDAC9
SLC16A14
DHX16
HNRNPL
ZSWIM8
ZSWIM4
SECISBP2
CAND1
SRPK2
COPS7A
STRA6
RPRD2
EYS
SPART
RGS4
SH2D3C
VLDLR
VEPH1
KRT13
PPP6R1
TMEM167B
MRPS33
PDE4D
CCDC89
RPTOR
MAP2K4
TNNT2
MRPL44
TRMT1
MEIG1
ANO6
TOMM40
CMTM2
FREM1
ZNF302
ZKSCAN5
TSPAN3
SBDS
MPP4
GSN
CYTH1
ICE1
DDX49
COPE
ZNF629
ADAMTS5
BAX
ATP2B4
ARMH3
HES1
MATR3
SYBU
RALGAPA1
ZNF317
P2RY6
GPR1
RUVBL2
GYS1
CYP19A1
SKA2
PRR11
MFSD6
PSMD3
ATP5F1B
CCDC9B
LIN37
RPL27
PTPRE
TCTN3
NBPF15
MRPL54
APBA3
ZFAND6
CLDN15
H4C3
GLDN
SEMA3C
GNRH1
SNX16
ADAMTS17
INTS5
TBL1X
PEX3
EXOSC2
ATG2A
ADAT2
ZCCHC8
CIZ1
MYT1
NUDT13
CLPB
ATXN7L3B
WWOX
SUGT1
MYT1L
ZNF263
SPAST
OPA1
C10orf88
CFAP69
ZFYVE26
TRIOBP
TSNAXIP1
RANBP10
TMEM106B
SMC4
OGDH
IFT80
MC4R
NDUFB5
MRPL47
CCDC146
FRA10AC1
IPO4
SIPA1L2
EHD4
HAND2
TARS2
TM9SF4
SCHIP1
MRPL27
EME1
DPP6
PPP1R12C
SART3
RPAP1
ISCU
MIA3
CLASP2
AKAP11
RPS7
VIPAS39
AHSA1
TOX4
RAB2B
ZNF169
PIF1
KLHL20
USF1
ATP5MF-PTCD1
ATP5MF
MBIP
AP2S1
ZNF350
FLYWCH2
ZMAT2
OIP5
NUSAP1
PNISR
RBBP5
ZNF777
TLR7
SECISBP2L
RTTN
RPF1
N6AMT1
MPND
FBXW7
ELOC
COPS4
EIF3D
FAM98B
TSC1
PLXNB2
GFI1B
RPL38
METTL25
CCDC59
SP2
TSPAN8
YJU2
SULT1C4
ZBTB18
TMCO1
NBAS
EPHB3
ZNF821
STAT3
FAM220A
CHRM5
LSMEM1
TUFM
SH2B1
RBL2
EIF3F
TACO1
MAB21L2
CEP41
COX7C
ARL17B
ARL17A
STT3A
ZNF229
HS3ST5
OGFOD1
NUDT21
RFX3
PAPOLA
EYA1
ALK
TNRC18
BAZ2A
ZFHX4
OSBPL9
RBM28
ATF6
PES1
WDR36
MSH3
GALK2
DHFR
COPS2
SHD
PLEKHM3
KCNH2
RAD52
LNP1
ZNF225
HNRNPA1
CBX5
ZNF175
RTN4IP1
QRSL1
QDPR
PRPH
KMT2D
XAB2
UTP25
LOC100289561
FOXP1
RC3H2
ZNF614
SF3A3
GPR180
GOSR2
SLX4IP
PRKAB2
CHD1L
APOLD1
KRR1
ZMAT4
ZC3HC1
UFD1
THAP4
NVL
LRRC17
GATAD2B
EMC4
CDC45
ABT1
FOXN3
ZNF331
SERP1
EIF2A
ELMO1
H2BC6
TMEM69
GPBP1L1
NFATC2IP
UBR2
ALG10
RAB3C
SF1
VPS25
EAPP
DNM1L
ANKRD17
UBE2F
ROCK2
OGFOD2
NFATC4
ZNF493
ZSCAN12
ZKSCAN3
TXN2
SMG7
DNAL1
CLN3
ARHGEF3
POLR1H
ARNT
JARID2
SPRED1
PPRC1
MADD
COTL1
CHKB
RPS26
CENPA
CEP120
HDGFL2
ELL
SF3B6
FAM228B
SELENOW
STK11IP
MARS1
ARHGAP9
LUM
UBB
FUBP1
DNAJB4
CHD8
CGAS
LARS1
ZNF227
VPS29
RAD9B
SSBP1
NLGN1
LRWD1
BPNT1
ALKBH4
CNOT1
MRTFB
WDR12
PLA2G6
KBTBD8
ISY1-RAB43
ISY1
GMPPA
CARF
ZNF566
TRMT61B
RPS11
SMG8
PRKCE
DNAJC25-GNG10
DNAJC25
ANGPT2
HNMT
POLR3E
ZNF226
SLC35B1
LRRN3
AP3B1
SEL1L
WDR46
PFDN6
TMEM259
NDUFAF5
ESF1
VPS50
RERE
POC1B-GALNT4
POC1B
LMAN2
HMGCR
HEPACAM2
GLIPR1L1
PEX12
ATP5MC2
ZNF726
SLC1A5
RALGAPB
CIAO2A
FBXO34
DDA1
DPP9
LCN6
SF3B5
LITAF
SHPRH
ZNF737
ZNF230
STEAP3
RNF6
PMPCB
MED18
KDM5C
KDM3A
HOXD3
EPS15
ATF3
SNX6
ZNF749
ZNF417
PABPN1
COG7
JMJD1C
MRPS23
SUFU
ACTR1A
ZNF484
MRPL24
SPRY4
ZNF8
CAMTA1
C15orf40
MFSD8
ABHD18
KCNMB2
ZNF548
ZNF264
FANCM
CBFA2T2
GPR85
RAB8A
NFIB
ADAMTS1
TDRKH
KCNT2
CARD8
KCTD5
PIP4P1
KLHDC9
ZNF552
VPS41
RPL3
PROSER1
NHLRC3
IKZF4
GSTA4
DYNC2I1
PHB
ZNF304
TTR
SP1
RMND1
PTRHD1
POLRMT
MFSD14C
CENPO
ARMT1
SLC39A9
ERH
ANGEL2
SOX4
ZNF440
STK16
RPL24
NDUFS4
GLB1L
FHL2
BDNF
PHB2
BANP
FAM243B
FAM243A
FAM126A
YME1L1
POLL
PCBP2
MASTL
GOLPH3L
ETV1
DPCD
PTBP1
UTP3
PSMB4
NFIA
TP53BP1
SNX17
EIF2B4
MRPL3
SPHK2
RPL18
RBFOX2
PYROXD1
LCA5
CDK5RAP1
CCDC61
C12orf73
ENDOG
SEMA6D
ZNF74
ZNF565
ZNF146
TTC37
MRPS22
ARSK
AQP10
PRMT5
ZSWIM3
ACOT8
RTRAF
MSTN
GGTA1
DLC1
ACTR6
FTCDNL1
DSTN
C15orf62
VPS45
ASPM
YOD1
WDR83OS
WDR83
TSSK6
TOR1A
SCNM1
RDH11
PSMD9
PPIP5K2
PFKFB2
NR2F1
NDUFA13
LYSMD1
HPGDS
HPD
MDM4
DMAC1
TTC31
CCDC142
ZNF668
ZNF646
FDXR
POLG
ZRANB3
ZFP37
SCO2
RPIA
R3HDM1
PSMC2
OR2L13
OGT
KDSR
H3C11
GGPS1
ARID4B
GRAMD1B
MRPL11
TNRC6B
RAB11A
ZNF790
PARS2
MFAP1
LSG1
HSPA13
DCT
PALB2
DCTN5
WDFY2
SGTA
PRMT2
NUP205
CRADD
UBE2S
MBNL1
SYNJ2BP-COX16
SYNJ2BP
CAPS2
SPRING1
RNFT2
ZNF764
STX6
PRMT1
PPFIBP2
NME1
NDUFB7
DNAL4
CAPN10
MYL6
FUZ
SREK1IP1
CWC27
TPR
QTRT2
ODR4
MRPL20
DDX52
CCP110
CCDC191
ATF4
RAB30
CEP128
PNKD
AAMP
B4GAT1
RBM39
PSMA5
FNDC3B
ZNF608
TAMALIN
SPAG9
STC1
ZNF805
ZSCAN16
LENG1
HELB
KNL1
LETMD1
ZNF221
NUDT4B
NUDT4
MRPS17
GGCT
FOXO3
BEST1
DDX41
MAST4
PPIL1
ERGIC2
LETM2
LRIG2
ZSCAN9
EXTL2
DNAJC14
ZNF793
SUPT4H1
STX4
RPA3
C12orf57
TMEM231
GRAMD4
SCD
RPS19
RPL37
NDUFA4
COASY
BRCA1
ANKRD28
RBP5
CLSTN3
POLR2J3
RASA3
CCDC90B
ZNF473
VRK3
ZNF564
ZNF563
UBOX5
PIKFYVE
LRRTM4
LAMTOR5
FASTKD5
DNASE1L3
DDX60L
CACHD1
BORCS7
ATF7IP
TAF5
RBM48
PEX1
SSUH2
FEM1A
ZNF429
BTN3A2
AGPAT4
CNOT3
NUTM2E
MED16
ZNF202
TCTA
RHOA
PUS7L
POLR1F
IRAK4
EIF2B5
UBA5
SPATC1L
AUH
ZNF267
ZNF497
SCYL3
NOL12
INKA2
DDX20
BET1
RAB5B
STXBP5
PCSK5
GET3
FGF7
B4GALT3
ZSCAN32
ZNF174
SUDS3
P3H4
NFKBIL1
MFSD14B
G2E3
FKBP10
ATP6V1G2
ANKRD40
H3C13
GTF2H4
ANKRD54
TMTC3
SMARCAL1
POLDIP3
PAK1IP1
MLLT11
KPNA6
CYB5B
CEP290
CDC42SE1
C6orf52
USE1
ZNF776
TUBA1A
TRIM11
SEC31B
CREB5
ATP6V1G1
TXNRD1
YARS2
TRMT12
BUB1B
NFKB1
MBNL2
LCN1
HNRNPUL1
PPIL3
NIF3L1
ANP32E
RBBP6
GPRC5A
GALNT14
ST8SIA1
GEMIN2
GAP43
DHX34
MMACHC
PHF5A
ACO2
PEF1
NUDCD1
MRPS35
CCDC177
CEP85L
NIP7
COG8
SIRT2
NFKBIB
LINS1
ASB7
RAD51AP1
C12orf4
NCAM1
POLD2
GEMIN6
CCDC130
DDC
SRFBP1
ZNF391
TTLL1
SPTLC1
METTL18
CADPS
C1orf112
SDR39U1
CEP126
NOP16
HIGD2A
ATG101
YLPM1
PPP1R3D
FAM217B
UBL7
MSANTD4
MED28
DUSP10
BAZ1A
SPSB3
NUBP2
CDK12
MVK
PUM3
KMT5C
ANAPC15
DNM2
ZNF394
RIMS1
EEF1A1
STAMBP
GSK3A
DPYSL2
SLC41A3
SIX3
PAF1
MED29
PPP1R35
PKIG
MTMR4
ECH1
RABEPK
YAF2
PEAK1
PCDHB4
LENG8
HMG20A
DST
CCNB2
B3GALT2
TMEM160
CCNT1
COPZ1
ALG9
OS9