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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
List of isozyme loci	RGP gmap98	10.18908/lsdba.nbdc00318-02-003	List of information about a cDNA clone that were mapped in the present high-density linkage map, and that were putatively identified as isozyme genes.	The data were acquired by similarity search of the cDNA using the protein database.	The cDNA inserts were sequenced from the 5' end for 300-400 bp, and were searched for sequence similarities in both the PIR (Rel. 48.0) and SWISS-PROT (Rel. 33) protein databases. The BLOSUM50 matrix was used for scoring similarity. After a similarity search, clones showing the best score with the expected value < 0.0001 were considered as functionally identical clones. And we have selected the ones that hit the isozyme gene in similarity search from Nucleotide sequence of the mapped cDNA.	Data detail open_in_full
Southern images	RGP gmap98	10.18908/lsdba.nbdc00318-02-006	Parental Southern hybridization image files.	Southern hybridization	For genotype segregation in F2 plants, Southern hybridization was performed with DNAs digested with the restriction enzymes; BamHI, BglII, EcoRV, HindIII, ApaI, DraI, EcoRI, KpnI.	Data detail open_in_full
The linked list of data	RGP gmap98	10.18908/lsdba.nbdc00318-02-001	List of link information to related data on each chromosome of rice high-density linkage maps.			Data detail open_in_full
Insert size of YAC clones	RGP physicalmap	10.18908/lsdba.nbdc00318-06-003	Insert size of YAC clones in the physical map	YAC size was scaled by Southern hybridization with YAC vector as a probe after gel fractionation using PFGE. YACs are arranged in numerical order.		Data detail open_in_full
YAC clone information	RGP physicalmap	10.18908/lsdba.nbdc00318-06-002	YAC clones selected with DNA markers	YAC clones selected with RGP DNA markers in each chromosome are listed. DNA marker names are different to those in "YAC contig information". For example, P0061 and P61 represents the same marker. Please refer to the following literature for the acquisition method of YAC clone data. Chromosome 1 : Wang et.al (1996), DNA Research, 3(5): 291-296. Chromosome 2 : Umehara et.al (1997), DNA Research, 4(2): 127-131. Chromosomes 3 and 11 : Tanoue et.al (1997), DNA Research, 4(2): 133-140. Chromosomes 4 and 7 : Koike et.al (1997), DNA Research, 4(1): 27-33. Chromosome 5 : Saji et.al (1996), DNA Research, 3(5): 297-302. Chromosome 6 : Umehara et.al (1996), Genome Research, 6(10): 935-942. Chromosomes 8 and 9 : Antonio et.al (1996), DNA Research, 3(6): 393-400. Chromosomes 10 and 12 : Shimokawa et.al (1996), DNA Research, 3(6): 401-406.		Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail