Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
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| FACS-based single-cell PCR data | Plabrain DB | 10.18908/lsdba.nbdc01108-001 |
Gene expression patterns at the single-neuron (cell) resolution using FACS-based single cell PCR. "+" indicates a cell co-expressing each gene and a neural-specific marker gene EF1. Although all genes in this table are known to be expressed in the nervous system, the patterns of "+" indicate that these genes have different expression pattern in single neurons. Image file names of plotting the gene expression on the FACS profile are also included. A set of the image files is downloadble from "Image files of PCR data plotted on the FACS profiles". |
FBSC-PCR (semi-quantitative single-cell RT-PCR using FACS) |
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| Image files of PCR data plotted on the FACS profiles | Plabrain DB | 10.18908/lsdba.nbdc01108-002 |
FACS-based single-cell PCR data was plotted on the FACS profile, in which cells are sorted by DNA content (Hoechst33342) and cell size (CalceinAM). Blue dots indicate the "+"cells. Individual FACS profile images are displayed when you click "FACS Profile" in "FACS-based single-cell PCR data" simple search. |
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| Image files of planarians analyzed by in situ hybridication and immunohistochemical staining | Plabrain DB | 10.18908/lsdba.nbdc01108-004 |
Image files of gene expression patterns by whole-mount in situ hybridication and also protein distribution by immunohistochemical staining of intact planarians or planarian head regions in the regeneration process. Images are displayed in "A list of image files of planarians analyzed by in situ hybridication and immunohistochemical staining" simple search.
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Whole-mount in situ hybridication, immunohistochemical staining |
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| Main | PLACE | 10.18908/lsdba.nbdc00168-001 |
Nucleotide sequence information. For each "Main" entry, there may be one or more "Reference" entries available. |
The CSV file (place_main.zip) was generated from nucleotide sequence information in place.seq of Raw Data (ASCII format). |
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| Raw Data (ASCII format) | PLACE | 10.18908/lsdba.nbdc00168-003 |
The document in EMBL-like format that contains brief descriptions of individual cis-elements. |
The nucleotide sequence motifs for the regulatory region of gene expression were surveyed from published papers. In addition, supplementary descriptions, references, and the accession numbers in sequence databases are provided. |
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |