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Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail
Compounds of PDB(Multiple Conformer) LigandBox 10.18908/lsdba.nbdc00551-006.V003

Compounds in PDB. All conformers are included in it. They are assembled on a file in Mol2 format. Comments in Mol2 format are extracted to another CSV file. They can be searched in simple search.

PDB

Data detail open_in_full
MeCab user dictionary: J-GLOBAL MeSH MeCab user dictionary for science technology term 10.18908/lsdba.nbdc02358-002.V002

A user dictionary for morphological analysis engine MeCab(http://taku910.github.io/mecab/) from J-GLOBAL science and technology terms that have linked to MeSH (Medical Subect Headings: https://www.nlm.nih.gov/mesh/) terms by United States National Library of Medicine. The dictionary items are based on IPA dictionary. Csv file is encoded in Shift-JIS and dic file is encoded in UTF-8.

IPA dictionary (mecab-ipadic-2.7.0-20070801 downloaded from MeCab's site [see above])、J-GLOBAL Knowledge

Data detail open_in_full
MeCab user dictionary: JST Thesaurus Headwords and Synonyms MeCab user dictionary for science technology term 10.18908/lsdba.nbdc02358-001.V002

We have made a user dictionary of morphological analysis engine MeCab (http://taku910.github.io/mecab/) headwords and synonyms of JST Thesaurus (2015 edition) . As no reading was given to synonyms (Headword Flag: 'V') in the original thesaurus, NBDC had given natural reading to synonyms in life science (Category code: 'LSxx', where xx is a two-digit number) and computer science (Category code: 'EG01') and reading of base form to synonyms in other categories.
The dictionary items are based on IPA dictionary. Csv file is encoded in Shift-JIS and dic file is encoded in UTF-8. Entries with zenkaku alphabets, numerals and symbols converted into corresponding hankaku characters are also included.
Please note that this dictionary can not be used as a thesaurus because information on relations between words is not included in the dictionary.

IPA dictionary (mecab-ipadic-2.7.0-20070801 downloaded from MeCab's site [see above]), JST Science and Technology Thesaurus (2015 edition)

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Data detail open_in_full
MeCab user dictionary: Nikkaji (Japan Chemical Substance Dictionary) MeCab user dictionary for science technology term 10.18908/lsdba.nbdc02358-003.V002

A user dictionary for morphological analysis engine MeCab(http://taku910.github.io/mecab/) from J-GLOBAL science and technology terms that have linked to Japan Chemical Substance Dictionary (Nikkaji), an organic compound dictionary database prepared by the Japan Science and Technology Agency. The dictionary items are based on IPA dictionary. Csv file is encoded in Shift-JIS and dic file is encoded in UTF-8.

IPA dictionary (mecab-ipadic-2.7.0-20070801 downloaded from MeCab's site [see above])、J-GLOBAL Knowledge

Data detail open_in_full
Analytical Method (M) Metabolonote 10.18908/lsdba.nbdc01324-003

Information about methods of instrumental analysis.

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Data detail open_in_full
Data name Database name DOI Description of data contents Data acquisition method Data analysis method Data detail