Search for Data Metadata

Showing 201 to 205 of 416 entries

Show entries

Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
GO classification Arabidopsis	KOME	10.18908/lsdba.nbdc00120-025	Results of GO (Gene Ontology) term classifications done based on homology searches against predicted CDSs of Arabidopsis thaliana	The results of blast searches against predicted CDSs of Arabidopsis thaliana were used for GO term classifications.	The GO term classifications were done based on the results of blast searches against predicted CDSs of Arabidopsis thaliana.	Data detail open_in_full
GO classification GenBank	KOME	10.18908/lsdba.nbdc00120-023	Results of GO (Gene Ontology) term classifications done based on GenBank homology searches	The results of GenBank homology searches were used for GO term classifications.	The GO term classifications were done based on the results of blastx searches against 10 GeneBank divisions.	Data detail open_in_full
GO classification InterPro	KOME	10.18908/lsdba.nbdc00120-024	Results of GO (Gene Ontology) term classifications done based on InterPro motif searches	The results of InterPro motif searches were used for GO term classifications.	The GO term classifications were done based on the results of InterPro motif searches.	Data detail open_in_full
Indica genome blast search result	KOME	10.18908/lsdba.nbdc00120-012	Results of blastn searches against indica genome sequences (top hits only)	Genome sequences of indica rice used for the searches were obtained from the BGI-RIS.	Performed blastn (blast 2.2.12) searches against the indica rice genome sequences. The results are filtered with Expect values lower than 1e-10.	Data detail open_in_full
InterPro search result	KOME	10.18908/lsdba.nbdc00120-021	Results of motif searches against the InterPro database	InterPro release 8.0 was used for the searches.	Performed motif searches against the InterPro database. The following 9 programs were used to find motifs. BlastProDom FPrintScan HMMPfam HMMPIR HMMSmart HMMTigr ProfileScan ScanRegExp SuperFamily	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail