Search for Data Metadata
| Data name ⇅ | Database name ⇅ | DOI ⇅ | Description of data contents ⇅ | Data acquisition method ⇅ | Data analysis method ⇅ | Data detail |
|---|---|---|---|---|---|---|
| Database Dump | fRNAdb | 10.18908/lsdba.nbdc00452-002 |
Dump data from database in the original site:
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Main RNA information was acquired from journal papers and existing RNA databases. Computational prediction results were used for genomic loci and secondary structures. Citation information was extracted from PubMed database by searching titles/abstracts including corresponding family names. |
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Data detail
open_in_full
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| fRNAdb Summary | fRNAdb | 10.18908/lsdba.nbdc00452-001 |
Functional RNA Database is a human curated catalog of functional RNAs acquired from journal papers. Each RNA is associated to a base sequence, genomic locus, putative secondary structure, citation, etc. |
Main RNA information was acquired from journal papers and existing RNA databases. Computational prediction results were used for genomic loci and secondary structures. Citation information was extracted from PubMed database by searching titles/abstracts including corresponding family names. |
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Data detail
open_in_full
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| Mapping Information | fRNAdb | 10.18908/lsdba.nbdc00452-004 |
Mapping results on genomes of 4 species
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Data detail
open_in_full
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| RNA secondary structure image | fRNAdb | 10.18908/lsdba.nbdc00452-005 |
RNA secondary structure images
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From "Sequence Data" |
Predicted by using CentroidFold (only when possible) |
Data detail
open_in_full
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| Sequence Data | fRNAdb | 10.18908/lsdba.nbdc00452-003 |
Functional RNA sequence files (FASTA)
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Acquired from journal papers and existing RNA databases. |
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Data detail
open_in_full
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| Data name | Database name | DOI | Description of data contents | Data acquisition method | Data analysis method | Data detail |