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Data name ⇅	Database name ⇅	DOI ⇅	Description of data contents ⇅	Data acquisition method ⇅	Data analysis method ⇅	Data detail
(reprocessed)HeliscopeCAGE sequencing, Delve mapping and CAGE TSS aggregation	FANTOM5	10.18908/lsdba.nbdc01389-008.V003	Time course and snapshot data by HeliScopeCAGE Human and mouse reads are re-mapped to new reference genome sequences (hg38/mm10). "basic" directory contains the following: 00_.assay_sdrf.txt: Experimental information for each sample (tabbed text) .bam: Binary read mapping results (BAM format) .bam.bai: Indexes of BAM files .ctss.bed.gz: TSS (CTSS) identified by CAGE tag analysis (BED format) .rdna.fa.gz: rDNA sequences (FASTA format)	HeliScopeCAGE (http://fantom.gsc.riken.jp/protocols/heliscope.html) Delve (Alignment software for short read) (http://fantom.gsc.riken.jp/jp/software/)		Data detail open_in_full
(reprocessed)pooled_ctss	FANTOM5	10.18908/lsdba.nbdc01389-013.V003	Mapping results of the all CAGE tags used from phase1.0 to phase2.0 Human and mouse reads are re-mapped for new reference sequences (hg38/mm10).			Data detail open_in_full
CAGE peaks	FANTOM5	10.18908/lsdba.nbdc01389-002.V003	Data about CAGE peak regions and RNA transcriptional initiation activities measured by CAGE		CAGE DPI (Decomposition-based peak identification)	Data detail open_in_full
CAGE peaks identified as true TSS by TSS classifier	FANTOM5	10.18908/lsdba.nbdc01389-007.V003	Evaluation of CAGE peaks It shows that the sequence close to CAGE peak has "TSS-like" or not. "TSS_human.bed.gz" and "TSS_mouse.bed.gz" contain identified TSS.		TSS Classifier（http://sourceforge.net/p/tometools/wiki/TssClassifier/）	Data detail open_in_full
CAGE_peaks_annotation	FANTOM5	10.18908/lsdba.nbdc01389-010.V003	Annotation of human and mouse CAGE peaks and RNA transcriptional initiation activities by CAGE		CAGE	Data detail open_in_full
Data name	Database name	DOI	Description of data contents	Data acquisition method	Data analysis method	Data detail