ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520479 | F9
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◢ SRX520468: F9

◢ SRX520474: F9

◣ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Trim29
Adam5
Ilf2
Gnb5
Stk3
Trib3
Dcpp1
H4c8
Gtf2a1l
Sumf1
Il1b
Slc38a5
Fxyd1
Lilr4b
Alox12b
Ly6l
Cxcl5
Mettl14
Eif2s3y
Slc44a3
Etv3l
Gria3
Rps29
Kcnn2
Avpr1a
Gpr141
Mill1
Inmt
AU018091
Selenbp1
Cnga1
Katna1
Gas1
Gcm2
Tas2r134
Proca1
Shox2
Pak3
Snorc
Ifna6
Zic4
Cbx4
Defb8
Vmn1r205
Tgtp2
Tgtp1
Musk
Fanci
Depdc1a
Cxxc4
Cmas
Ltbp1
Akap17b
Fam71f1
Dclk3
Trim34a
Zp1
Tpcn2
Pcx
Foxp2
Scgb2b3
Nkx2-5
Olfr222
Vgll4
Olfm5
Dytn
Fuom
Prss51
Cyp2d9
Asb2
Olfr813
Scgb2b1
Lmo3
Nxf2
Cyp2f2
Slc2a9
Mboat1
Scn8a
Slx4ip
Cngb3
Ostn
Retnla
Pabpc5
Rab27b
Cyren
Wipf2
Klri1
Zfp846
Rbks
Babam2
Igfbp2
Stbd1
En2
Coro6
Ppp6r3
Iigp1
Tc2n
Rffl
Pomgnt2
Fuca2
Zswim8
Agbl5
Cped1
Cdx1
Frmd4b
Rarb
H2-M5
Ube2dnl2
Cdh26
Abcc3
Samd14
Slamf7
Gfpt2
Gm3173
Gnl2
Chpf2
Trhr2
Oxgr1
Prss47
Snupn
Mrgpra2a
Ubc
Gpm6a
Alox5ap
Papln
Emp2
Oxnad1
Dph3
Rpl37rt
Ces2a
Lrrtm4
Olfr1200
Rftn2
Ucn3
Epha5
Dcpp3
Meikin
Strip1
Runx1t1
Il22ra2
Chic1
Kdm5a
Echdc2
Pde4a
Cyp3a16
Knl1
Shank1
Gdpd2
Ikzf4
Tmem248
Stau2
Adgra2
Hs1bp3
Pnp
Tmem164
Plekhb1
Zfp710
Lsm6
Alx4
Spp1
Herc6
Zcchc9
Pate4
Irak3
Ndp
Dysf
Dsg4
Tnfsf10
Pcdh7
Itgal
Cplx2
Bpifb1
Gnai2
Uck1
Arhgef19
Slitrk3
Trim2
Rxfp1
Sacm1l
Fbxo31
Gm45337
Porcn
Cfl2
Hivep3
Nrarp
Arf4
Islr
Syngap1
Tm7sf3
Ciao2b
Lamp5
Olfr125
Krtap6-1
Ankrd66
Olfr971
Itih1
Spink13
Pcdhb9
Lyzl1
Ceacam11
Smarca1
Ms4a4d
Acsm2
Vmn1r188
Olfr1208
Lrrn3
Cd163l1
Adamts6
Pxn
Brk1
Ptpmt1
Dhx32
Fabp6
C130073F10Rik
Gpr132
Exosc2
Ildr1
Afg3l1
Slc6a16
Mynn
Nudt16
Ttk
Vamp1
Ctnna3
Tdpoz3
Casp14
H2-Eb2
Nt5c1b
Ak5
Lancl2
Mapk10
Guca1a
Fgf6
Fubp3
Mdk
Ces1f
Ndufs8
Mlxipl
Fabp9
Abcc2
Ogfod2
Cox7a1
H2-Q8
H2-Q6
Grm4
Nek2
Myo1g
Epgn
Rapsn
Ppdpf
Guf1
Atp5e
Acp6
Paip1
Ubap1
Cox17
Ttpal
Dpp9
Frmd4a
Abcb7
Rarg
Dusp9
Rbpj
Actrt1
Olfr1286
Sla
Pdzrn3
Neurod4
Kcnj15
Cabp2
Atxn2
Mpc1
Olfr859
Pyroxd1
Ccdc141
Cdyl
Zic1
Olfr915
Bhmg1
Cldn34c4
Hoxa5
Olfr1375
Gap43
Zdhhc18
Otud5
Dennd6a
Fam32a
Slc43a1
Phf5a
Aco2
Spata33
Chmp1a
Dedd
Usp17lb
4930503B20Rik
Il33
Ms4a20
Paqr5
Slc6a14
1700021F07Rik
Enpp4
Hagh
Fahd1
Pex2
Fam50b
Zfp438
Rasl10b
Sdha
Ccdc127
Pus7l
Irak4
Jsrp1
H2-Q9
H2-Q7
Sbno1
Mrpl37
Cyb5rl
Taf6l
Cdk15
H2-Bl
Cxcr3
Tfap2c
Alkbh7
St3gal3
Stard6
4930503L19Rik
Homer3
Olfr630
Gpm6b
Arl6ip4
Celf2
Cfap20dc
Rnase4
Ang
Tomm5
Rhox11
Rpl30
H2-K1
Rab8a
Mpv17l2
Plxdc2
Gabbr1
Gtpbp4
Dusp5
Agtpbp1
Tfrc
Tcp11
Mllt6
Dag1
Pcmtd1
Atg10
Dlg3
Mcf2
Mecom
Plpp7
H2-Q2
Muc1
Rara
Mymx
Tspan9
Cox5b
Yars
S100pbp
Pdcl3
Zfp930
Tpcn1
Iqcd
Rhobtb1
Lipe
Cacnb3
Fam155a
Dgat2
Eapp
Tex14
H4c3
Slc15a1
Sspn
H3c6
Mtf2
H3f3b
Rdm1
Polr2a
Mkrn1
H4c4
H3c7
H2bc9
Tmem191c
H3c11
H4c11
H3c15
H3c14
Clcn4
Oasl1
Ing1
Hspa5
H3c2
H4c18
H4c9
Gm20594
H3c3
H2ac19
H2ac18
H2bc21
H2ac21
H2ac20
H4f16
H3c13
H2bc18
H2bc4
H2ac6
H2ax
Bmt2
Jund
H2bc12
H2ac12
Arrdc2
H1f4
Nabp1
Hnrnpab
Rsrp1
H3c10
H4c17
Btg2
Ubb
Mphosph9
2810006K23Rik
H1f2
Hspa8
Taf4
H4c1
Calr
Zbtb37
Fam53c
H4c12
Tob1
Ints6
Taf13
Gm3448
Gm3417
H3c4
Gtf2a1
Icam1
H4c2
Gm3435
Calm2
Hexim1
Rpl3
Atp2a2
Arl15
Sde2
Nufip2
Ifitm7
Bmerb1
9030025P20Rik
Junb
Utp14b
Acsl3
Hsp90aa1
Srsf5
Sntb2
Insig1
H3c1
Haus1
Atp5a1
Csrnp2
Ppp1r10
Mrps18b
Slc9a1
Dnajb9
Pbld2
Ddit4
Klf6
H2bc6
Poldip3
Calm1
Rbm14
Gm21992
Gpx1
Sgk1
Sub1
H4c14
Gtf2b
Ctsl
Ier2
Znfx1
Fus
Raf1
Aplp2
Atp1a1
Jpt1
Mylpf
Mpp7
Gadd45a
Hrob
Cited2
H2ac4
Prdx1
Actb
Rnaset2b
Eif4g2
Gpcpd1
Rnf19b
Tsc22d1
Clu
Mat2a
Tubb4b
Tcte3
Ermard
BC005537
Rnaset2a
H2bc22
H2bc11
H2ac22
H2ac11
Errfi1
Srsf2
Mfsd11
Sfi1
Sf3b1
Eif4a1
Mknk2
Mib2
Smarca5
Pcna
Arl4d
Smc3
H3c8
P4ha1
H1f3
Mcl1
Letmd1
Wsb1
Hsp90ab1
Dhx8
Zfp36l1
Amd2
Amd1
Btg1
Hnrnpa2b1
Cbx3
Gtf2f1
Arl6ip1
H2bc13
H2ac13
Srsf3
Amacr
Phc1
Ndufa6
Trp53inp1
Ftl1
Luzp1
H2bc1
H2ac1
H2ac10
Slc38a2
Vegfa
Sephs2
Ifrd1
Ier5
H2bc8
H2ac8
Tuba4a
H4bc24
H2bc23
H2ac24
H2ac23
Slbp
Spg11
Ddx5
Cep95
Marchf3
Gtf2a2
Dmxl1
Hjurp
A730008H23Rik
Lman1
Gtf3c6
Zfand5
Rita1
Cog6
Tnrc6c
Mbd3
Tob2
Prdm14
Rhob
Pabpc1
Sqstm1
Fos
Ppp1r3c
Skp1
Acly
Klf7
Dusp1
Cpt1a
Vcl
Peli1
Msh6
Rnd3
Rcbtb1
Slc25a3
H4c6
Pigt
Cep43
Rps12
Slc25a39
Gapdh
Ep400
H2bc7
H2ac7
Dhcr24
Msmo1
Dnaja1
Wsb2
Eef1a1
Hnrnph1
Mad2l1bp
H2bc15
H2ac15
Ccnyl1
Mafb
Slc9a3r1
Maml1
Ghdc
Epha2
Abr
P4hb
Dppa2
Rps3
Glul
Rps20
Socs3
Jun
Sap18b
Sap18
Plk2
Mterf1b
Ncl
Clic4
Snrpe
Mbtps1
Traf7
Dhx9
Herc2
Pdia3
Catsper2
Styxl1
Mdh2
Ndufs7
Cebpa
Cirbp
Ppp1r2
Ctnnb1
H2bc14
Sirt3
Psmd13
Mterf1a
Sirt1
Ttc41
Kmt5b
Hsp90b1
Impdh2
Tra2b
Cdkn2aip
Ankrd11
Idi1
Ipmk
Rnf103
Trpm3
Itpr1
Kctd5
Frmd6
Grcc10
Fasn
Uspl1
Tcta
Rhoa
Wdr77
Atp5pb
Ppp1r15a
Plekha4
Ankrd28
Chd9
Mertk
Susd6
Hhex
Urgcp
Usp37
Cnot9
Gls
Smg5
Tsc22d2
Caap1
Ndel1
Map1lc3b
Slc25a30
Napepld
Rps6
Hnrnpu
Sesn2
Paxip1
H2bc3
Hmga1b
Hmga1
Klf10
Por
Erf
Slc25a51
Pdhx
Apip
Klhl21
Txnip
Fdx1
Mrpl1
Mylip
Chordc1
Chchd2
Hspa1l
Hspa1a
Acer2
Nfkbia
Gpx4
Dnajb1
Dnajb4
Med23
U2surp
Ncoa3
Mrpl39
Kdm4c
Rpl23
Man1a
Kntc1
Fyco1
Arhgap19
Acy3
Fth1
Dgat1
Atp1b2
Sertad2
Serinc3
Slc31a1
Fkbp15
Rps2
Prmt8
Eif4a2
Txn1
Tagap1
Dok4
Cd81
Rpl7a
Med22
Ccdc110
Rcl1
D230025D16Rik
Whamm
Fmc1
Ern1
Zfp119b
Eif3a
Actn4
Nudt4
Taf1d
4931406C07Rik
Rpl13
Gadd45g
Smyd4
Rpa1
Zswim3
Acot8
Rnf125
Adpgk
Irs2
Hspa1b
Degs1
Cebpd
Rplp0
Rusc2
Sertad1
Rps27rt
Rps27
Rab13
Atp5g3
Rps24
H3f3a
Ddx3x
Ccnt1
Nrd1
Ppia
Ulk2
Ncoa4
Glce
Gclc
Mapkapk2
Pcif1
Snx18
Cpm
Mak16
Vmn2r4
Rpl9
Nfe2l2
Lias
Tti2
Rps9
Chchd1
Sgf29
Rbbp6
Baiap2
Acad12
Mrps28
Actg1
Rcn2
Arrdc3
Scnn1g
Map2k4
Npm1
Eif4e
Ankrd39
Nr6a1
Nsrp1
Rbm39
Pigl
Ncor1
Mapk1
Klf2
Pik3r3
Zfp119a
Ggcx
Fam25c
Vps52
Rps18
Pdk1
Ndufaf3
Gadd45b
Abcb8
Tuba1c
Slc5a3
Rbm4b
Mrps6
Eef2
Slc20a1
Hmox2
Midn
Uqcrc1
Shld2
Plec
Map2k2
Glud1
Adk
Zfp959
Rpl8
Rtn3
Jak1
Zfp963
Tmem39a
Smurf2
Slc16a10
Ost4
Trappc3
Rpl17
Sod1
Wdr82
Tnnt1
Ddx24
Csrnp1
Plk3
Rab33b
Nfe2l1
Naca
Eif1
Dip2b
Taf4b
Mapk14
Nfkbiz
Unc5b
Slc2a1
Epc1
Dnajc1
Gpat4
Nme1
Ctdp1
Ccar1
Tango2
Med21
Ksr1
Cpsf1
Etfrf1
Casc1
Ssbp1
Rnf38
Id3
Mob1b
Hint1
Bsg
Ttc7
Ppib
B2m
Rnd1
Pfn1
Rhou
Tiparp
Edrf1
Sugt1
Setd5
Commd1
Taco1
Cat
Spry4
Rpl15
Pcf11
Nkiras1
2410002F23Rik
Paip2
Irf8
Kcnk5
Phf11d
Lsm14a
Snrpg
Pgrmc1
B4galt3
Lgr4
Ubr3
Sgpl1
Pdlim7
Herpud1
Ptma
Net1
Knop1
Iqck
Fbxo8
Cep44
Bclaf1
Acer3
Usp53
Ccdc71
Slx1b
Rapgef6
Psme4
Srp19
Atp5b
Nop58
Pik3c2a
Fam43a
Rpl41
Kbtbd7
Hs3st3b1
Wdr25
Wars
Top1
Ell2
Ctbs
H2aw
Odc1
Ywhag
Mtr
Atp5j
Tmem267
Tgoln2
Tgoln1
Flnb
Esyt2
Manf
Slc35d1
Ints14
G3bp1
Ptpa
Crat
Nt5dc3
Atg4d
Rab5b
Rpl10a
Ints8
Plpp1
Rnf149
Mtfr1
Ddit3
H2az1
Nfyb
Rab43
Dynll1
Sec22b
Alg1
Irak2
Zfp770
Ndufa2
Ik
Fra10ac1
Selenok
Endog
Crot
Bcl2l1
Kansl2
Fut8
Becn1
Ahcy
Trmt2a
Ranbp1
Ptp4a1
Pih1d1
Aldh16a1
Lpar5
Tab1