ChIP-Atlas: Target genes

Potential target genes for Rara

Query protein: Rara
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX520468 | F9
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
Rara's Target genes

◢ Rara: Average

◢ SRX3301664: Embryonic limb

◢ SRX3301665: Embryonic limb

◢ SRX018669: ES cells

◢ SRX208055: ES cells

◢ SRX208062: ES cells

◢ SRX520462: F9

◣ SRX520468: F9

◢ SRX520474: F9

◢ SRX520479: F9

◢ SRX4369776: Germline stem cells

◢ SRX4369779: Germline stem cells

◢ SRX4369782: Germline stem cells

◢ SRX4369785: Germline stem cells

◢ SRX337439: Liver

◢ SRX018670: mESC derived neural cells

◢ SRX118692: mESC derived neural cells

◢ SRX118693: mESC derived neural cells

◢ SRX675957: Th1 Cells

◢ Rara: STRING

Slc15a1
Adgra2
Mtf2
Hivep3
Cdk15
Rhobtb1
Mkrn1
Fubp3
Oxnad1
Dph3
Tmem191c
Rarb
Cdx1
Enpp4
Sntb2
Tomm5
Dusp9
Mylpf
Slc43a1
Dppa2
Phf5a
Aco2
Ifitm7
Bmerb1
Ttk
Phc1
Tcp11
Porcn
Plekhb1
Tm7sf3
Phf11d
Rbks
Babam2
Wsb2
Uck1
Msh6
Muc1
Ttpal
Zdhhc18
Tfrc
Mib2
Eif4e
Dok4
Slc6a16
Hrob
Arhgap19
Abr
Lpar5
Prdm14
Ghdc
Ndufa6
Cxcr3
Nr6a1
Alkbh7
Gtpbp4
Dhx32
Mymx
Crybg2
Acp6
Fam25c
Prmt8
Spata33
Chmp1a
Dennd6a
Klhl34
Arf4
Tnnt1
Rab8a
Rxrg
Rnf125
Abcb7
Abcb8
Fkbp8
Sdha
Ccdc127
Bmt2
Dedd
Slc25a39
Ptpmt1
Icam1
Itpka
Pbld2
Ptprz1
Zyg11a
Letmd1
Dag1
Cog6
Cpt1a
Slc39a2
Rbm14
Gm21992
Mllt6
Slc35f2
U2surp
H2-Bl
Gm18905
Nek2
Lipe
Mpc1
Hagh
Fahd1
Pyroxd1
Irf5
Zfp930
Agtpbp1
Rarg
Gipc2
Gabbr1
Mbd3
Fbln1
Sirt3
Psmd13
Mdk
Taf6l
Tspan9
Zfyve28
Cst3
Mrpl37
Cyb5rl
Foxn4
Ubr7
Ppdpf
Ccar1
Cfl2
Rusc2
Ccr4
Cfap20dc
Rcbtb1
Sugt1
Ankrd28
Atp2a2
Cox17
Midn
Dpp9
Slx1b
Bola2
Sipa1
Fbxo8
Cep44
Rpe
Sgk1
Adgrg5
Tmem39a
Wdr25
Wars
Dhcr24
B230307C23Rik
Fam32a
Dusp5
Gpr180
Ubc
Stra8
Wfikkn1
BC028528
Pbx2
Aurkc
Pdk1
Racgap1
Cox5b
Hectd1
Cep70
Slc25a51
Rita1
Lims1
Guf1
Atox1
Plpp2
Ubap1
St3gal3
Ap1s1
Mrpl40
Hira
Capn3
Stard6
4930503L19Rik
S100a16
Otud5
Phactr3
Pcmtd1
Fam120a
Rnf5
Lman1
H2-Q8
H2-Q6
Afg3l1
Chordc1
Tle6
BC048679
Chchd1
Atp5e
Zfp710
Tab1
Acp5
Slc2a3
Ccnb1ip1
Smyd4
Rpa1
Iars
Wnt8a
Dleu7
Snx29
Wdr26
Sec24c
Zrsr2
Gna12
Ino80c
A930018P22Rik
Spa17
Siae
Krt222
Zfp438
Msmo1
Cln8
Homer3
Rbpj
Iqgap3
Tlr5
Gm48552
Tafa4
Ndufa2
Ik
Gm45915
Robo4
Rasl10b
Cnpy1
Tdgf1
Dennd10
Tatdn2
Fjx1
Trpm3
Zfp532
H2-M5
Atg10
Faah
Atp5j
Lekr1
Usp9x
Slc39a14
Pdcl3
Rfc4
Trim56
Prrt3
Slc25a19
Shisa5
Hspb7
Kremen1
Cyp46a1
Camk1d
Knop1
Iqck
Trpm7
Luzp1
Gmnn
H2-Q2
Abhd8
Nfe2l1
Mrpl45
Vegfc
Ppp1r10
Mrps18b
Steap3
Ciao2b
Mpv17l2
Erf
Cyb5r4
Kif21a
Arih2
Cryzl2
Lrp10
Ankrd9
Znrd2
Ilf2
H3c11
Spry4
Colca2
Slc13a2
Rasl11a
Ap1b1
Chd1l
Cfap161
Cacnb3
Asap3
1700019D03Rik
Stat4
Nr5a2
Grid2ip
Atxn2
Calu
Nploc4
Nr1d2
1700102P08Rik
Trim29
Zfp319
Usb1
Rps29
Otp
Triml2
Amacr
Akap1
Hexb
Rara
Hhip
Naca
Ttc24
Src
Cilp2
Kbtbd7
Grk3
2310022A10Rik
Adap1
Mrpl4
Krt79
Smad6
Chd9
Ppib
Gng8
Haus1
Atp5a1
Wdr82
Lefty1
Fignl1
Wdsub1
Scd1
Rsph4a
Vash1
Gm14393
Mfsd3
Anpep
Clcn4
Ndufs8
Nt5dc3
Anxa5
1810062G17Rik
Nanos3
Stk35
Bhmg1
Mrps15
Ilvbl
Uqcrc1
Ogdh
Ccdc60
Amt
Inppl1
Anapc5
Dnase2a
Cdk17
Slc39a4
H2-Q9
H2-Q7
Fads1
Hspa5
Slc25a1
Fam169a
Pigt
Abca3
Abca17
Wdr77
Atp5pb
Pgpep1
Gm45871
Ptf1a
Pnmal2
Hint1
Zfp33b
Brwd1
Chchd3
AI467606
Nr0b1
Arl15
Gdf15
Pfn1
Heyl
Rps24
Ist1
Trp53inp2
Otud7b
Hnrnpab
Pla2g15
Ccne1
Rgs3
Zcchc24
Mdh1b
Fastkd2
Cops6
Fam71e1
Emc10
Slc16a13
Stk38
Tmem253
Fam122b
Atp6ap1l
Pex11g
Yif1b
Sema4d
As3mt
Mettl14
Smarca5
Dmxl1
Zfp770
Nectin1
Commd5
Ubxn8
Cln5
Gm8439
Aqp7
Tmem259
Gjb1
Por
Trip12
Fbxo36
Lgi2
Pou5f1
Rhox11
Tmem143
Syngr4
Vcan
Reep3
Csn3
Cnot2
Fbxo7
Galt
Dlg3
Spata24
Cenpt
Pym1
Vwa8
Gspt2
Arfgef2
Stub1
Pank3
Pttg1ip
Srek1
Macroh2a1
Fbxo15
Dnajc19
Tube1
Fam229b
Caap1
Csrnp1
Eif2b5
Lsm4
Tradd
Fbxl8
Sulf2
Ntrk1
Lynx1
Map1lc3b
Gpi1
Ccn2
H1f2
Spata5
Nudt6
Tbxa2r
H2-Q1
Tagap1
Clpb
Dnajc22
Pop7
Pttg1
Retn
Ttc7
Rps3
Ifna6
Etfa
Mbd2
Mycbp
Gm3696
Tsc22d2
Hoxa5
Smim7
Armc8
Zfp53
Ado
Rec8
Klk15
Zfp292
Spint4
Lims2
Taf1b
Snx15
Gjc1
Ctsl
Smyd5
Zfp395
Ndufs7
Tyw5
Maip1
Rbm41
Cndp2
Agfg2
Ptp4a2
Dhx35
Mrs2
Cox6a2
Ing1
Lbh
Mobp
Hax1
Fam166c
Rp1l1
2610528J11Rik
1700016H13Rik
Pus7l
Irak4
Otulin
Srebf1
Tasp1
Got1l1
Pex2
Kat2a
Dennd2c
Hspb9
Shoc2
Bbip1
Paqr7
Spdya
Pam16
1700008O03Rik
Tm4sf5
Set
Stim1
Bmpr1b
Raf1
Dido1
Gid8
Aspdh
Brap
Acad10
Sbno2
Kcnc1
Mthfsl
Cd38
Pipox
Srms
Fndc11
Trmt2a
Ranbp1
Mrpl16
Emc9
Grpel1
Nr3c1
Prss47
Ogfod2
Bcl11a
Mob1b
Cyc1
Cabin1
Tlx2
Kif2c
Hadh
Sema4b
Dkk4
Nqo2
Mif4gd
Il33
Rbm47
Xkr5
Palld
Ccdc66
Tiparp
Ppif
Rxylt1
Tbc1d22a
Nmnat3
Kcnd2
Prdm10
Anapc10
Abce1
Cacna2d3
Ldb1
Ankhd1
Zfp768
Trib3
Uckl1
Abcg2
Cep43
Klhl22
R3hdml
Egr3
Vmac
Ndufa11
Acad12
Sulf1
Rgl3
Sertad2
Sdhaf1
D830030K20Rik
Kcnb1
Gpr12
Ywhag
Phf14
Ndufa4
Atp5g1
3300002I08Rik
Gtf2ird1
Edrf1
Use1
Pspc1
Ptgr2
Eif2s3y
Proca1
Mapk8
Ap5s1
Khsrp
Gm3500
Dmtn
Acot9
Pdp2
Tmc8
Rfx4
Ubac2
Cbx1
Slc4a7
Got2
Btn1a1
Jund
Fah
Dnpep
B4galnt1
Szt2
Med8
Car3
Mbd6
Bcl3
Rtn4ip1
Qrsl1
Plac9b
Plac9a
Msi2
Gm9780
Acp4
Hmox2
Dnaja3
Tm9sf2
S1pr2
Sema4g
Slc35d1
Pcca
Tmem63c
Mief1
Tmem121b
Pth1r
Pcolce
Gpcpd1
Cd164
Olfr96
Uspl1
Ascc2
Elovl6
Gadd45g
Nyap1
Nckap5l
Pik3r1
Got1
Mthfs
Map1a
Whamm
Nsa2
Gfm2
Pcnx4
Gabpa
Itga9
Sirt6
Ankrd24
Fdx1
Mrps33
Atp5j2
Wdr72
Rsrp1
Gata6
Tedc2
Rcsd1
Klk1b22
1190005I06Rik
Prelid3b
Haus4
Phb
Cabcoco1
Nfe2l2
Mrps28
Rhot1
Csnk1a1
Rbbp8
Zfp946
Nipal1
Pabpc1
Zfp473
Vrk3
Gypc
Aspscr1
Lsm11
Plekhd1
Srp54a
2700097O09Rik
Nudt16
Tjap1
Tank
Atl3
Acyp2
Rom1
Eml3
Slco4a1
Ripply1
Rasgef1a
Pigl
Ncor1
Pes1
Pibf1
Dis3
Gm3005
Rif1
Jmjd7
Dph5
Mettl27
Zfp513
Senp1
Pfkm
Nfic
Septin12
Fzd10
Crip2
Sucla2
Mmaa
Spp1
Cdc20
Atp5mpl
Sowahd
Ltbp4
Ifitm5
Sspn
Yars
S100pbp
Elovl7
Sbno1
Sh2b1
Fam169b
Kansl3
Tppp3
Susd2
Usp37
Cnot9
Wdr7
2610042L04Rik
Dnajc4
Ctsf
Aars
Tango2
Idh3b
Cep135
Zkscan6
Arvcf
Mecom
Sun3
Gm11992
Gga1
Fam199x
Smim20
Blvra
Hmces
Dzip1
Ptp4a3
Grip2
Brk1
Prcp
Phyhd1
Zscan20
Plpp3
Tmem129
Tacc3
Wdfy3
Zfhx3
Zcwpw2
Azi2
Gas1
Rnf10
Mrps36
Abcg4
Trim2
Dgke
Casd1
Cdkn2aip
Harbi1
Atg13
Kpna3
Bard1
Xiap
Lman2
Tma7
Ccdc51
Lrp5
Mif
Rerg
Irf3
Bcl2l12
Notch1
Zfp3
Get1
Trerf1
Mrpl1
Alas1
Med12
Dhrs7
Cox20
Tubb3
Rad51
Satb1
Ano1
Ctsz
Sec14l5
Rassf2
Wfs1
Sptssa
Armc4
Stox2
Eapp
H4c8
Tex14
H4c3
H3c6
H3f3b
Rdm1
Polr2a
H4c4
H3c7
H2bc9
Adam5
H4c11
H3c15
H3c14
Oasl1
H3c2
H4c18
H4c9
Gm20594
H3c3
Gnb5
H2ac19
H2ac18
H2bc21
H2ac21
H2ac20
H4f16
H3c13
H2bc18
H2bc4
H2ac6
H2ax
H2bc12
H2ac12
Arrdc2
H1f4
Nabp1
H3c10
H4c17
Btg2
Ubb
Mphosph9
2810006K23Rik
Hspa8
Taf4
H4c1
Scn8a
Calr
Zbtb37
Fam53c
H4c12
Tob1
Ints6
Taf13
Gm3448
Gm3417
H3c4
Gtf2a1
H4c2
Gm3435
Pcx
Calm2
Hexim1
Rpl3
Stk3
Sde2
Nufip2
9030025P20Rik
Junb
Dcpp1
Pnp
Utp14b
Acsl3
Hsp90aa1
Srsf5
Insig1
H3c1
Csrnp2
Cbx4
Slc9a1
Dnajb9
Sumf1
Ddit4
Klf6
H2bc6
Poldip3
Calm1
Gpx1
Sub1
H4c14
Gtf2a1l
Gtf2b
Sacm1l
Ier2
Znfx1
Fus
Aplp2
Atp1a1
Jpt1
Mpp7
Gadd45a
Cited2
H2ac4
Prdx1
Actb
Rnaset2b
Eif4g2
Rnf19b
Tsc22d1
Dgat2
AU018091
Clu
Mat2a
Tubb4b
Tcte3
Ermard
BC005537
Rnaset2a
H2bc22
H2bc11
H2ac22
H2ac11
Errfi1
Srsf2
Mfsd11
Sfi1
Sf3b1
Eif4a1
Mknk2
Pcna
Arl4d
Smc3
H3c8
P4ha1
H1f3
Mcl1
Fbxo31
Wsb1
Hsp90ab1
Dhx8
Zfp36l1
Amd2
Amd1
Btg1
Hnrnpa2b1
Cbx3
Gtf2f1
Arl6ip1
H2bc13
H2ac13
Srsf3
Selenbp1
Trp53inp1
Ftl1
Tas2r134
H2bc1
H2ac1
H2ac10
Slc38a2
Vegfa
Sephs2
Ifrd1
Ier5
H2bc8
H2ac8
Tuba4a
H4bc24
H2bc23
H2ac24
H2ac23
Slbp
Spg11
Gcm2
Ddx5
Cep95
Marchf3
Gtf2a2
Mill1
Hjurp
A730008H23Rik
Gtf3c6
Kcnn2
Zfand5
Slc38a5
Tnrc6c