ChIP-Atlas: Target genes

Potential target genes for HOXC9

Query protein: HOXC9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX111320 | BE(2)-C
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
HOXC9's Target genes

◢ HOXC9: Average

◣ SRX111320: BE(2)-C

◢ SRX111321: BE(2)-C

◢ HOXC9: STRING

DEPP1
SLC6A2
NRL
DCAF11
TNFAIP2
GALNT16
TBC1D10B
MYLPF
HOXC5
NDUFS8
SCML4
PPP5C
TIAM2
ING3
DRGX
KIAA0319
NRSN1
GNL2
PIH1D1
ALDH16A1
HOXC4
UBXN10
GLDN
OLFML2B
KATNB1
SEMA5B
GFRA3
GPR68
TOMM40L
APOA2
TRIO
DIABLO
FBXW2
P2RX1
PRR13
ZSCAN31
SLC17A8
C6
ABCA12
KCNAB2
WIZ
MTRNR2L2
MSH3
DHFR
SRGAP2C
SRGAP2B
WDR74
TBX15
GSX2
ITGB5
TLE3
RMDN3
LPIN1
RIMBP2
C1orf100
ILF2
SYBU
ARFIP1
HOXC6
BFSP2
RAPGEF2
CHD1
SMYD3
SLC7A14
ZNF654
CGGBP1
IGFBP5
SLITRK5
STRN3
AP4S1
LRRC15
KBTBD11
CYTH3
NCK1
CMTM4
EVI5L
LENG9
GPR83
ATG9B
ABCB8
VAV3
KL
USP7
TSHZ2
KCNK16
TAS2R20
CPO
LIMS1
NPTXR
C1orf185
CCDC33
MTRNR2L8
CHCHD3
SLC12A3
ZBTB45
GGT1
DUX4
ZNF488
ADCYAP1R1
EPRS1
ZBTB39
TCF4
SLC25A25
GRWD1
PRKAG2
MFSD6
KHDC4
HAPLN1
MGAT4C
C14orf180
ADGRD1
KDM4B
MRPS14
TBX2
FOXN4
PLEKHS1
GDF11
IFT57
MECOM
PARVA
CITED2
PWWP2A
C3orf52
STON2
PDZRN3
FAM163B
GABRA1
ATF3
SULT1C4
TMEM60
PHTF2
SUGP2
ARMC6
MACROD2
VSTM2A
RET
DNAJB8
PPP3CA
INTS4
PLA2R1
ZZZ3
LOXL1
VSTM5
EEF1AKNMT
PHKB
ITFG1
ELAVL4
MRPL28
RSAD2
ASB8
RNF145
CDH18
CATSPER3
CHD9
PHF14
CRYBG1
IQSEC1
RHBDD1
TUBG1
RETREG3
ID4
PRKD3
OPRM1
GJA5
H3C15
H3C14
H2AC19
H2AC18
COX16
QSER1
TRIL
TNFRSF19
TBCC
BICRAL
MTRNR2L9
PLAC1
PSMC1
SEMA4B
TUB
TIMM44
ZNF552
TFPT
PRPF31
CTDSP1
MFSD12
RP1L1
CEP152
NEMP1
HTR4
CENPF
CALM2
CASQ1
MAP1LC3B
FBXO31
EXOSC2
FDPS
ZNF555
MEX3B
PRR25
RBM25
BAHCC1
ZFPM2
SUPT7L
SLC4A1AP
NRG1
ABAT
PLEKHA5
NTN3
SH3GLB2
CCNG1
HES6
MAD2L2
HOXA6
HOXA3
RBKS
BABAM2
LINGO1
PPM1A
PHLDB1
PCOLCE2
ASF1B
TMEM79
SMG5
PHOX2B
RNF4
GALK1
SIRT4
TMOD1
RUFY3
KCNJ3
ZNF667
SRP14
CHRM3
PIGM
SLC18A1
SARS1
ATP5MC3
PBX3
ARL14EPL
SGIP1
KCNK15
RAPGEF3
GOLGB1
DGKB
ZNF510
ASNSD1
ASDURF
CHST6
NSD2
RAB39A
FOCAD
NT5C2
USP40
KNL1
PAFAH1B2
CLASP2
COX7A2L
ANKH
MTA1
TOM1
MTRNR2L1
UHMK1
MOV10L1
MLC1
PDCL
B3GLCT
TBC1D4
PODN
TFB2M
CNST
ITSN1
CRYZL1
FRMD3
ADGRE5
FILIP1
MAPK13
MN1
ALG10B
COMTD1
CDCA3
PDCD1
RABGAP1L
RBM12
CPNE1
NGDN
DIPK1A
CDIPT
PRKG1
SORL1
CYP51A1
WNT5A
RARB
DRD2
RIC8B
BCL9L
DHRS2
DIXDC1
TNS1
DPP9
ZBTB38
PRKAR2B
COG3
TPCN1
ITM2C
GCSAM
MTA3
KCNG3
PMVK
TRAF3IP3
LSM5
AVL9
ANKHD1-EIF4EBP3
ANKHD1
PXYLP1
UBL4B
ARL15
TMEM245
SMAD9
SPINK5
SLC31A2
ARID5A
ESRRB
TRUB2
COQ4
INAFM2
CWF19L2
ULBP3
SGSM1
DAOA
LYN
MAIP1
PAXBP1
LIMA1
DPH2
ATP6V0B
ERCC6L2
AMOT
PRRT4
SMARCD2
MAP2
ACVR1
APMAP
TIGD6
HMGXB3
TCERG1
C3orf38
EFCAB6
SELENBP1
TDRD9
ATP5MPL
NUF2
TFAP2A
BCAS2
DLX6
AMMECR1L
AP3M2
RAB11B
SLC22A8
GGCT
PGM2
LOC283710
PCDH15
GRK3
ADAMTS19
ISLR2
IRF2BPL
THUMPD1
SEC22B
NOMO3
SLC41A2
HEXIM2
NOMO1
PLXNA1
PRRC2B
TPM1
AGTR1
HEBP2
TMEM126B
DLG2
ZNF132
RPP25
STUM
FAM219A
DNAI1
SLC17A2
KHSRP
ICA1
VPS52
RPS18
TTC12
WDR89
RPL6
AFF3
NFYC
TPGS1
CLDN4
CSDE1
IFI27L2
IGDCC3
ASXL2
COL5A2
SFR1
KIF26A
AOPEP
UTS2R
PLEKHG5
GBA
TUBB1
DACH1
PSME3IP1
TMBIM6
GNA12
BEND4
SYNPO
AHCYL1
SLC4A2
CDK5
E4F1
NOMO2
NTN4
PSMB2
DBH
RGMB
MRPS15
KIF3B
CUL2
SYNE3
KRT19
SSRP1
P2RX3
SLC44A3
CLDN11
SNAP23
RMDN2
NME7
BLZF1
SLC36A4
NECAP1
BLOC1S6
ZIK1
ZNF106
ZNHIT3
CAMK4
CUX2
LUC7L2
FMC1-LUC7L2
FMC1
MORC3
CREBL2
FCF1
AREL1
ANTXR2
DAB2IP
TYW1B
FAM107B
SORT1
ZMYND8
SLC26A7
RFT1
FZD6
FOXP1
NUMB
ZBTB40
C12orf43
HAGH
FAHD1
HDAC9
SLC16A14
ZFAND6
ZBTB2
DHX16
BAMBI
RAB31
TBC1D2
SH2B2
FGF14
B3GNT3
METTL7A
CCDC9B
HNRNPL
ZSWIM8
CHCHD1
ZSWIM4
SYT15
LOC102724488
SECISBP2
RACGAP1
CAND1
POGZ
SRPK2
STARD13
COPS7A
STRA6
RPRD2
EYS
SPART
RGS4
SH2D3C
VLDLR
VEPH1
RASGRP1
TUBB2B
ASB6
MRPS33
KRT13
PPP6R1
TMEM167B
RBM15
PDE4D
CCDC89
TBX3
RPTOR
CARS1
PRPF4
CDC26
IGFBP3
MAP2K4
TNNT2
MRPL44
TRMT1
NACC1
MEIG1
ANO6
TOMM40
MYL10
RNF14
RALGDS
NME8
CMTM2
WNK1
FREM1
ZNF394
ZNF302
ZKSCAN5
TYW1
TSPAN3
SBDS
MPP4
RNF24
RAB14
GSN
CYTH1
ICE1
DDX49
COPE
ZNF629
LETM1
ADAMTS5
SLAMF8
THRAP3
BAX
ATP2B4
ARMH3
CERKL
HES1
MATR3
RALGAPA1
PLAAT1
CYP19A1
ZNF317
G3BP1
P2RY6
GPR1
RUVBL2
NOM1
GYS1
SNX7
PSMD6
SKA2
PRR11
NEURL1
ARID1A
PSMD3
ATP5F1B
PSENEN
LIN37
PRKAB2
CHD1L
RPL27
PTPRE
H2BU1
H2AW
TMEM101
TCTN3
NBPF15
MRPL54
APBA3
CYP8B1
PC
MARCKS
CLDN15
H4C3
H1-6
EML4
SEMA3C
GNRH1
PMPCB
CHST12
SNX16
ADAMTS17
SLC35B4
GP5
PTPDC1
INTS5
TBL1X
CYP20A1
PEX3
GPR34
ATG2A
ADAT2
TMCO5A
ZCCHC8
CIZ1
MYT1
TTYH3
PLXDC2
NUDT13
CLPB
ATXN7L3B
WWOX
SUGT1
BTG2
MYT1L
MIDEAS
ZNF263
SPAST
OPA1
NETO2
C10orf88
CFAP69
ZFYVE26
RAD51B
THEMIS
TRIOBP
TSNAXIP1
RANBP10
TMEM106B
SMC4
OGDH
IFT80
MC4R
NDUFB5
MRPL47
OSBPL6
TPD52
CCDC146
FRA10AC1
IPO4
SIPA1L2
EHD4
WAC
HAND2
TARS2
TM9SF4
PACSIN3
SCHIP1
MRPL27
EME1
SNX22
HTR3B
DPP6
BHLHE22
PPP1R12C
TMEM258
SART3
RPAP1
ISCU
FEN1
PCSK6
MIA3
HPS3
ROBO1
AKAP11
RPS7
VIPAS39
AHSA1
TOX4
RAB2B
ZNF169
PIF1
STYX
TMEM232
KLHL20
MSX2
USF1
ATP5MF-PTCD1
ATP5MF
MBIP
AP2S1
ZNF350
COL21A1
FLYWCH2
ZMAT2
OIP5
NUSAP1
LCT
PNISR
RBBP5
ZNF777
TMEM70
TLR7
STAP2
SECISBP2L
RTTN
RPF1
N6AMT1
MPND
FBXW7
ELOC
COPS4
EIF3D
MKKS
TUBA1C
GABRR1
SMAD1
TAGAP
PLXNB2
FAM98B
TSC1
GFI1B
FBXO7
RPL38
PTPN21
SHC1
FLAD1
CKS1B
TLX3
METTL25
CCDC59
B3GNT4
PRSS41
SP2
SDE2
TSPAN8
YJU2
ZBTB18
TMCO1
SNX21
RNASE7
NBAS
EPHB3
EPOR
MTHFSD
SRRD
HPS4
KCNH2
TMEM35B
DHRS3
ZNF821
STAT3
FAM220A
CHRM5
LSMEM1
LARP1
TUFM
SH2B1
RBL2
ADNP
STK32C
LRRC27
EIF3F
TACO1
MAB21L2
PRUNE2
HS3ST5
CEP41
COX7C
ARL17B
ARL17A
PCBD1
GLE1
LBR
STT3A
ZNF229
C7orf50
OGFOD1
NUDT21
RFX3
PAPOLA
MYL1
KIFC3
EYA1
ALK
ARID5B
TNRC18
LOC100129484
BAZ2A
ZFHX4
OSBPL9
RBM28
ATF6
PES1
WDR36
GALK2
COPS2
SHD
PLEKHM3
MYCBP2
RBFOX2
STK11
RAD52
TOMM70
NCS1
LNP1
ZNF225
HNRNPA1
CBX5
ZNF175
RTN4IP1
QRSL1
QDPR
CLRN2
PRPH
KMT2D
XAB2
PCP2
UTP25
LOC100289561
RC3H2
ZNF614
SF3A3
GPR180
GOSR2
SLX4IP
MSRB2
ZMAT4
APOLD1
KRR1
ZC3HC1
UFD1
THAP4
NVL
LRRC17
GATAD2B
FAM167A
EMC4
CDC45
ABT1
LCN9
FOXN3
SULF2
ZNF331
SERP1
EIF2A
ELMO1
H2BC6
PRKCSH
CCDC151
TMEM69
GPBP1L1
NFATC2IP
ZBED9
UBR2
RIMS2
ALG10
ANXA2
RAB27A
RAB3C
SF1
VPS25
EAPP
DNM1L
ANKRD17
RNF224
CYSRT1
OSBPL1A
UBE2F
ROCK2
RNF208
OGFOD2
NFATC4
ZNF493
ZSCAN12
ZKSCAN3
TXN2
TEX9
SMG7
RFX7
NIPBL
DNAL1
CLN3
APOBR
ARHGEF3
POLR1H
ARNT
JARID2
SPRED1
PPRC1
MADD
KCTD3
CPT1B
COTL1
CHKB
ERMAP
RPS26
PKD1L1
CENPA
CEP120
HDGFL2
FH
ELL
CDON
C19orf67
SF3B6
FAM228B
SELENOW
STK11IP
MARS1
ARHGAP9
LUM
UBB
PAPOLB
FUBP1
DNAJB4
CHD8
CGAS
KCNAB1
GNG12
HERPUD1
LARS1
ZNF227
VPS29
RAD9B
SSBP1
CUEDC1
TAS2R38
RINL
NLGN1
LRWD1
IARS2
BPNT1
ALKBH4
CNOT1
MYO1B
MRTFB
WDR12
SPEGNB
SLIT3
PLA2G6
KBTBD8
ISY1-RAB43
ISY1
GMPPA
CARF
ZNF566
SFRP4
EPDR1
TRMT61B
BANP
RPS11
NAPSA
TAS2R1
SMG8
PRKCE
DNAJC25-GNG10
DNAJC25
ANGPT2
ACSL6
HNMT
POLR3E
ZNF226
B3GAT1
SLC35B1
LRRN3
AP3B1
SEL1L
WDR46
PFDN6
PRICKLE1
TMEM259
CNN2
LNX1
NDUFAF5
ESF1
VPS50
RERE
PYGO1
POC1B-GALNT4
POC1B
LMAN2
HMGCR
HEPACAM2
GALNT4
DDR1
GLIPR1L1
CAPS2
PEX12
ATP5MC2
EIF2B2
SETD1B
ZNF726
WASL
SNX1
SLC1A5
RALGAPB
CIAO2A
WDPCP
FBXO34
ZNF148
MRPL34