[ Japanese | English ]
About This Database

Sequence Collection

Data description
Data name
Sequence Collection
DOI
10.18908/lsdba.nbdc00713-001
Description of data contents
A collection of complete genomes annotated with β-barrel membrane protein predictions. For a genome that have multiple chromosomes, the entry set for each chormosome is given individually.
Data file
File name :
tmbeta_genome_sequence_collection.zip
File URL :
File size :
8.8 KB
Simple search URL
http://togodb.biosciencedbc.jp/togodb/view/tmbeta_genome_sequence_collection#en
Data acquisition method

275 complete genomes, including 23 genomes from archaea, 237 from bacteria and 15 from eukaryote, were taken from the NCBI database.

Data analysis method

-

Number of data entries

427 entries

Data detail
Data item Description
Sequence Collection ID

Sequential serial number assigned to each genome.

Classification

Biological classification (Archaea, Bacteria and Eukaryota)

Organism Name

Name of the organism. Chromosome number is added to the name if the organism has multiple chromosomes.

Locus

RefSeq ID of the genome sequence.

FASTA File

Name of the FASTA file where the genome sequence is listed.