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Life Science Database Archive
TMBETA-GENOME

Sequence Collection

Data detail

info Data name Sequence Collection
info DOI 
info Description of data contents 

A collection of complete genomes annotated with β-barrel membrane protein predictions. For a genome that have multiple chromosomes, the entry set for each chormosome is given individually.

info Data file 
File name:
tmbeta_genome_sequence_collection.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/tmbeta-genome/LATEST/tmbeta_genome_sequence_collection.zip
File size:
8.8 KB
info Simple search URL 
info Data acquisition method 

275 complete genomes, including 23 genomes from archaea, 237 from bacteria and 15 from eukaryote, were taken from the NCBI database.

info Data analysis method -
info Number of data entries 

427 entries

Data itemDescription
Sequence Collection ID Sequential serial number assigned to each genome.
Classification Biological classification (Archaea, Bacteria and Eukaryota)
Organism Name Name of the organism. Chromosome number is added to the name if the organism has multiple chromosomes.
Locus RefSeq ID of the genome sequence.
FASTA File Name of the FASTA file where the genome sequence is listed.