[Credits]

Life Science Database Archive
SSBD

Database Description

General information of database

info Database name SSBD
info Alternative name Systems Science of Biological Dynamics database
info DOI 
info Creator 
Creator Name:
Yukako Tohsato
Creator Affiliation:
Osaka Electro-Communication University, Department of Engineering Informatics
Creator Name:
Kenneth H. L. Ho
Creator Affiliation:
RIKEN Quantitative Biology Center, Laboratory for Developmental Dynamics
Creator Name:
Koji Kyoda
Creator Affiliation:
RIKEN Quantitative Biology Center, Laboratory for Developmental Dynamics
Creator Name:
Shuichi Onami*
Creator Affiliation:
RIKEN Quantitative Biology Center, Laboratory for Developmental Dynamics
info Contact address 2-2-3 Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan,
RIKEN Center for Biosystems Dynamics Research
Shuichi Onami
E-mail: このメールアドレスはスパムボットから保護されています。閲覧するにはJavaScriptを有効にする必要があります。
info Database classification Other Molecular Biology Databases
info Database classification 動態データベース
info Organism 
Taxonomy Name:
Homo sapiens
Taxonomy ID:
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Mus musculus
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Canis lupus familiaris
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Rattus norvegicus
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Xenopus laevis
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Danio rerio
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Drosophila melanogaster
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Dictyostelium discoideum
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Caenorhabditis elegans
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Escherichia coli
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info Database description Systems Science of Biological Dynamics database (SSBD) is an open database for collecting and sharing microscopy image data and quantitative data of biological dynamics, which are generated from image analysis or computer simulation. SSBD provides a wide variety of data from single-molecules to cell to organism in different species. A web browser based multidimensional visualization tool is available for viewing data interactively online.
info Features and manner of utilization of database The image data and its meta-information are provided in the raw image file format. Downloaded files can be imorted into ImageJ using Bio-Formats. The quantitative data and its meta-information are provided in the Biological Dynamics Markup Language (BDML) format, which is a unified format for representing quantitative data of biological dynamics. The image data and quantitative data are provided through API, which allows third parties to develop their applications. In addition, SSBD also provides software tools for data visualization and analysis.
info License CC BY-SA Detail
info Background and funding -
info Reference(s) 
Article title:
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena
Author name(s):
Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
Journal:
Bioinformatics/2016年11月/Volume 32, Issue 22
External Links:
 
Article title:
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data
Author name(s):
Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami
Journal:
Bioinformatics/2015年4月/Volume 31, Issue 7
External Links:
 

Original website information

info Database maintenance site RIKEN
info URL of the original website 
info Operation start date 2013/09/03
info Last update date 2018/03/20
info URL of the portal site -
info Whole data download -
info Referenced database PubMed
info Entry list Not available
info Query search Available
info Web services Available
info URL of Web services 
info Need for user registration Not available