SSBD
About This Database
Database Description
| General information of database | |
Database name
|
SSBD
 |
|---|---|
|
Alternative name
|
Systems Science of Biological Dynamics database |
|
DOI
|
10.18908/lsdba.nbdc01349-000 |
|
Creator
|
Creator Name
Yukako Tohsato::/dbmeta_creator_name_en|0|dbmeta_creator_group_en::::dbmeta_creator_english_name_en|0|dbmeta_creator_group_en::::/dbmeta_creator_english_name_en|0|dbmeta_creator_group_en::::dbmeta_creator_organization_en|0|dbmeta_creator_group_en::Osaka Electro-Communication University, Department of Engineering Informatics::/dbmeta_creator_organization_en|0|dbmeta_creator_group_en::::dbmeta_creator_jglobal_id_en|0|dbmeta_creator_group_en::::/dbmeta_creator_jglobal_id_en|0|dbmeta_creator_group_en::::dbmeta_creator_researchmap_id_en|0|dbmeta_creator_group_en::::/dbmeta_creator_researchmap_id_en|0|dbmeta_creator_group_en::::dbmeta_creator_orcid_en|0|dbmeta_creator_group_en::::/dbmeta_creator_orcid_en|0|dbmeta_creator_group_en::::dbmeta_creator_literature_jglobal_id_en|0|dbmeta_creator_group_en::::/dbmeta_creator_literature_jglobal_id_en|0|dbmeta_creator_group_en::::cckend_dbmeta_creator_group_en::::/cckend_dbmeta_creator_group_en::::cck_dbmeta_creator_group_en::dbmeta_creator_grp_en::/cck_dbmeta_creator_group_en::::dbmeta_creator_name_en|1|dbmeta_creator_group_en::Kenneth H. L. Ho::/dbmeta_creator_name_en|1|dbmeta_creator_group_en::::dbmeta_creator_english_name_en|1|dbmeta_creator_group_en::::/dbmeta_creator_english_name_en|1|dbmeta_creator_group_en::::dbmeta_creator_organization_en|1|dbmeta_creator_group_en::RIKEN Quantitative Biology Center, Laboratory for Developmental Dynamics::/dbmeta_creator_organization_en|1|dbmeta_creator_group_en::::dbmeta_creator_jglobal_id_en|1|dbmeta_creator_group_en::::/dbmeta_creator_jglobal_id_en|1|dbmeta_creator_group_en::::dbmeta_creator_researchmap_id_en|1|dbmeta_creator_group_en::::/dbmeta_creator_researchmap_id_en|1|dbmeta_creator_group_en::::dbmeta_creator_orcid_en|1|dbmeta_creator_group_en::::/dbmeta_creator_orcid_en|1|dbmeta_creator_group_en::::dbmeta_creator_literature_jglobal_id_en|1|dbmeta_creator_group_en::::/dbmeta_creator_literature_jglobal_id_en|1|dbmeta_creator_group_en::::cckend_dbmeta_creator_group_en::::/cckend_dbmeta_creator_group_en::::cck_dbmeta_creator_group_en::dbmeta_creator_grp_en::/cck_dbmeta_creator_group_en::::dbmeta_creator_name_en|2|dbmeta_creator_group_en::Koji Kyoda::/dbmeta_creator_name_en|2|dbmeta_creator_group_en::::dbmeta_creator_english_name_en|2|dbmeta_creator_group_en::::/dbmeta_creator_english_name_en|2|dbmeta_creator_group_en::::dbmeta_creator_organization_en|2|dbmeta_creator_group_en::RIKEN Quantitative Biology Center, Laboratory for Developmental Dynamics::/dbmeta_creator_organization_en|2|dbmeta_creator_group_en::::dbmeta_creator_jglobal_id_en|2|dbmeta_creator_group_en::::/dbmeta_creator_jglobal_id_en|2|dbmeta_creator_group_en::::dbmeta_creator_researchmap_id_en|2|dbmeta_creator_group_en::::/dbmeta_creator_researchmap_id_en|2|dbmeta_creator_group_en::::dbmeta_creator_orcid_en|2|dbmeta_creator_group_en::::/dbmeta_creator_orcid_en|2|dbmeta_creator_group_en::::dbmeta_creator_literature_jglobal_id_en|2|dbmeta_creator_group_en::::/dbmeta_creator_literature_jglobal_id_en|2|dbmeta_creator_group_en::::cckend_dbmeta_creator_group_en::::/cckend_dbmeta_creator_group_en::::cck_dbmeta_creator_group_en::dbmeta_creator_grp_en::/cck_dbmeta_creator_group_en::::dbmeta_creator_name_en|3|dbmeta_creator_group_en::Shuichi Onami*
Creator Affiliation
|
|
Contact address
|
2-2-3 Minatojima-minamimachi, Chuo-ku, Kobe 650-0047, Japan, RIKEN Center for Biosystems Dynamics Research Shuichi Onami E-mail: sonami@riken.jp |
|
Database classification
|
Other Molecular Biology Databases |
|
Database classification
|
動態データベース |
|
Organism
|
|
|
Database description
|
Systems Science of Biological Dynamics database (SSBD) is an open database for collecting and sharing microscopy image data and quantitative data of biological dynamics, which are generated from image analysis or computer simulation. SSBD provides a wide variety of data from single-molecules to cell to organism in different species. A web browser based multidimensional visualization tool is available for viewing data interactively online. |
|
Features and manner of utilization of database
|
The image data and its meta-information are provided in the raw image file format. Downloaded files can be imorted into ImageJ using Bio-Formats. The quantitative data and its meta-information are provided in the Biological Dynamics Markup Language (BDML) format, which is a unified format for representing quantitative data of biological dynamics. The image data and quantitative data are provided through API, which allows third parties to develop their applications. In addition, SSBD also provides software tools for data visualization and analysis. |
|
License
|
CC BY-SA Detail |
|
Background and funding
|
-
|
|
Reference(s)
|
Article title
SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena
Author name(s)
Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
Journal
Bioinformatics/2016年11月/Volume 32, Issue 22
External Links
Article title
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data
Author name(s)
Koji Kyoda, Yukako Tohsato, Kenneth H. L. Ho, Shuichi Onami
Journal
Bioinformatics/2015年4月/Volume 31, Issue 7
External Links
|
| Original website information | |
|
Database maintenance site
|
RIKEN
|
|
URL of the original website
|
http://ssbd.org/ http://ssbd.qbic.riken.jp/ |
|
Operation start date
|
2013/09/03 |
|
Last update date
|
2018/03/20 |
|
URL of the portal site
|
- |
|
Whole data download
|
- |
|
Referenced database
|
PubMed
|
|
Entry list
|
Not available |
|
Query search
|
Not available |
|
Web services
|
Not available |
|
URL of Web services
|
http://ssbd.qbic.riken.jp/SSBD/api/v3/ |
|
Need for user registration
|
Not available |